Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_13820 and OLJFJH_13825 are separated by 42 nucleotides OLJFJH_13825 and OLJFJH_13830 are separated by 90 nucleotides
OLJFJH_13820: OLJFJH_13820 - ATP-dependent RNA helicase HrpA, at 2,909,791 to 2,913,690
_13820
OLJFJH_13825: OLJFJH_13825 - N-acetylmuramoyl-L-alanine amidase, at 2,913,733 to 2,914,602
_13825
OLJFJH_13830: OLJFJH_13830 - serine protease, at 2,914,693 to 2,915,499
_13830
Position (kb)
2913
2914
2915 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8 at 2913.034 kb on - strand, within OLJFJH_13820 at 2913.037 kb on + strand, within OLJFJH_13820 at 2913.037 kb on + strand, within OLJFJH_13820 at 2913.037 kb on + strand, within OLJFJH_13820 at 2913.187 kb on + strand, within OLJFJH_13820 at 2913.187 kb on + strand, within OLJFJH_13820 at 2913.275 kb on + strand, within OLJFJH_13820 at 2913.279 kb on + strand, within OLJFJH_13820 at 2913.280 kb on - strand, within OLJFJH_13820 at 2913.365 kb on + strand at 2913.365 kb on + strand at 2913.366 kb on - strand at 2913.487 kb on - strand at 2913.534 kb on + strand at 2913.534 kb on + strand at 2913.902 kb on - strand, within OLJFJH_13825 at 2913.929 kb on + strand, within OLJFJH_13825 at 2913.930 kb on - strand, within OLJFJH_13825 at 2913.992 kb on - strand, within OLJFJH_13825 at 2913.992 kb on - strand, within OLJFJH_13825 at 2913.992 kb on - strand, within OLJFJH_13825 at 2913.995 kb on + strand, within OLJFJH_13825 at 2913.996 kb on - strand, within OLJFJH_13825 at 2914.084 kb on - strand, within OLJFJH_13825 at 2914.104 kb on + strand, within OLJFJH_13825 at 2914.104 kb on + strand, within OLJFJH_13825 at 2914.105 kb on - strand, within OLJFJH_13825 at 2914.105 kb on - strand, within OLJFJH_13825 at 2914.146 kb on + strand, within OLJFJH_13825 at 2914.206 kb on - strand, within OLJFJH_13825 at 2914.206 kb on - strand, within OLJFJH_13825 at 2914.347 kb on + strand, within OLJFJH_13825 at 2914.347 kb on + strand, within OLJFJH_13825 at 2914.347 kb on + strand, within OLJFJH_13825 at 2914.347 kb on + strand, within OLJFJH_13825 at 2914.347 kb on + strand, within OLJFJH_13825 at 2914.417 kb on + strand, within OLJFJH_13825 at 2914.418 kb on - strand, within OLJFJH_13825 at 2914.429 kb on + strand, within OLJFJH_13825 at 2914.430 kb on - strand, within OLJFJH_13825 at 2914.451 kb on + strand, within OLJFJH_13825 at 2914.451 kb on + strand, within OLJFJH_13825 at 2914.451 kb on + strand, within OLJFJH_13825 at 2914.676 kb on + strand at 2914.761 kb on - strand at 2914.792 kb on + strand, within OLJFJH_13830 at 2914.824 kb on + strand, within OLJFJH_13830 at 2914.860 kb on + strand, within OLJFJH_13830 at 2914.908 kb on + strand, within OLJFJH_13830 at 2914.908 kb on + strand, within OLJFJH_13830 at 2914.909 kb on - strand, within OLJFJH_13830 at 2914.909 kb on - strand, within OLJFJH_13830 at 2914.925 kb on + strand, within OLJFJH_13830 at 2914.926 kb on - strand, within OLJFJH_13830 at 2915.065 kb on + strand, within OLJFJH_13830 at 2915.065 kb on + strand, within OLJFJH_13830 at 2915.066 kb on - strand, within OLJFJH_13830 at 2915.196 kb on + strand, within OLJFJH_13830 at 2915.208 kb on + strand, within OLJFJH_13830 at 2915.368 kb on - strand, within OLJFJH_13830 at 2915.514 kb on + strand at 2915.515 kb on - strand at 2915.515 kb on - strand at 2915.552 kb on + strand at 2915.553 kb on - strand at 2915.555 kb on - strand at 2915.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 2,913,034 - OLJFJH_13820 0.83 -0.5 2,913,037 + OLJFJH_13820 0.83 +0.8 2,913,037 + OLJFJH_13820 0.83 -1.7 2,913,037 + OLJFJH_13820 0.83 -0.4 2,913,187 + OLJFJH_13820 0.87 -0.2 2,913,187 + OLJFJH_13820 0.87 -0.6 2,913,275 + OLJFJH_13820 0.89 +0.8 2,913,279 + OLJFJH_13820 0.89 +1.3 2,913,280 - OLJFJH_13820 0.89 -0.3 2,913,365 + -0.2 2,913,365 + +0.5 2,913,366 - +0.4 2,913,487 - -1.0 2,913,534 + -0.3 2,913,534 + +0.3 2,913,902 - OLJFJH_13825 0.19 -0.1 2,913,929 + OLJFJH_13825 0.23 -1.5 2,913,930 - OLJFJH_13825 0.23 -0.5 2,913,992 - OLJFJH_13825 0.30 +0.3 2,913,992 - OLJFJH_13825 0.30 +1.1 2,913,992 - OLJFJH_13825 0.30 +5.0 2,913,995 + OLJFJH_13825 0.30 +0.0 2,913,996 - OLJFJH_13825 0.30 -1.0 2,914,084 - OLJFJH_13825 0.40 +4.0 2,914,104 + OLJFJH_13825 0.43 -0.1 2,914,104 + OLJFJH_13825 0.43 +0.2 2,914,105 - OLJFJH_13825 0.43 +0.2 2,914,105 - OLJFJH_13825 0.43 -0.6 2,914,146 + OLJFJH_13825 0.47 -0.9 2,914,206 - OLJFJH_13825 0.54 +2.9 2,914,206 - OLJFJH_13825 0.54 -0.8 2,914,347 + OLJFJH_13825 0.71 -0.4 2,914,347 + OLJFJH_13825 0.71 +0.7 2,914,347 + OLJFJH_13825 0.71 -1.0 2,914,347 + OLJFJH_13825 0.71 +1.8 2,914,347 + OLJFJH_13825 0.71 +0.5 2,914,417 + OLJFJH_13825 0.79 -0.8 2,914,418 - OLJFJH_13825 0.79 +1.1 2,914,429 + OLJFJH_13825 0.80 -1.6 2,914,430 - OLJFJH_13825 0.80 +0.8 2,914,451 + OLJFJH_13825 0.83 -0.3 2,914,451 + OLJFJH_13825 0.83 +8.0 2,914,451 + OLJFJH_13825 0.83 +0.5 2,914,676 + +0.4 2,914,761 - -0.1 2,914,792 + OLJFJH_13830 0.12 +1.3 2,914,824 + OLJFJH_13830 0.16 -0.0 2,914,860 + OLJFJH_13830 0.21 -1.5 2,914,908 + OLJFJH_13830 0.27 -0.2 2,914,908 + OLJFJH_13830 0.27 +0.4 2,914,909 - OLJFJH_13830 0.27 +1.0 2,914,909 - OLJFJH_13830 0.27 +0.1 2,914,925 + OLJFJH_13830 0.29 +0.5 2,914,926 - OLJFJH_13830 0.29 +0.1 2,915,065 + OLJFJH_13830 0.46 +3.4 2,915,065 + OLJFJH_13830 0.46 +0.5 2,915,066 - OLJFJH_13830 0.46 +0.5 2,915,196 + OLJFJH_13830 0.62 +0.0 2,915,208 + OLJFJH_13830 0.64 -0.3 2,915,368 - OLJFJH_13830 0.84 +0.0 2,915,514 + -0.0 2,915,515 - -0.2 2,915,515 - +0.2 2,915,552 + +0.1 2,915,553 - +0.9 2,915,555 - -1.0 2,915,583 - +0.0
Or see this region's nucleotide sequence