Strain Fitness in Erwinia amylovora T8 around OLJFJH_13825

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_13820 and OLJFJH_13825 are separated by 42 nucleotidesOLJFJH_13825 and OLJFJH_13830 are separated by 90 nucleotides OLJFJH_13820: OLJFJH_13820 - ATP-dependent RNA helicase HrpA, at 2,909,791 to 2,913,690 _13820 OLJFJH_13825: OLJFJH_13825 - N-acetylmuramoyl-L-alanine amidase, at 2,913,733 to 2,914,602 _13825 OLJFJH_13830: OLJFJH_13830 - serine protease, at 2,914,693 to 2,915,499 _13830 Position (kb) 2913 2914 2915Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 2913.034 kb on - strand, within OLJFJH_13820at 2913.037 kb on + strand, within OLJFJH_13820at 2913.037 kb on + strand, within OLJFJH_13820at 2913.037 kb on + strand, within OLJFJH_13820at 2913.187 kb on + strand, within OLJFJH_13820at 2913.187 kb on + strand, within OLJFJH_13820at 2913.275 kb on + strand, within OLJFJH_13820at 2913.279 kb on + strand, within OLJFJH_13820at 2913.280 kb on - strand, within OLJFJH_13820at 2913.365 kb on + strandat 2913.365 kb on + strandat 2913.366 kb on - strandat 2913.487 kb on - strandat 2913.534 kb on + strandat 2913.534 kb on + strandat 2913.902 kb on - strand, within OLJFJH_13825at 2913.929 kb on + strand, within OLJFJH_13825at 2913.930 kb on - strand, within OLJFJH_13825at 2913.992 kb on - strand, within OLJFJH_13825at 2913.992 kb on - strand, within OLJFJH_13825at 2913.992 kb on - strand, within OLJFJH_13825at 2913.995 kb on + strand, within OLJFJH_13825at 2913.996 kb on - strand, within OLJFJH_13825at 2914.084 kb on - strand, within OLJFJH_13825at 2914.104 kb on + strand, within OLJFJH_13825at 2914.104 kb on + strand, within OLJFJH_13825at 2914.105 kb on - strand, within OLJFJH_13825at 2914.105 kb on - strand, within OLJFJH_13825at 2914.146 kb on + strand, within OLJFJH_13825at 2914.206 kb on - strand, within OLJFJH_13825at 2914.206 kb on - strand, within OLJFJH_13825at 2914.347 kb on + strand, within OLJFJH_13825at 2914.347 kb on + strand, within OLJFJH_13825at 2914.347 kb on + strand, within OLJFJH_13825at 2914.347 kb on + strand, within OLJFJH_13825at 2914.347 kb on + strand, within OLJFJH_13825at 2914.417 kb on + strand, within OLJFJH_13825at 2914.418 kb on - strand, within OLJFJH_13825at 2914.429 kb on + strand, within OLJFJH_13825at 2914.430 kb on - strand, within OLJFJH_13825at 2914.451 kb on + strand, within OLJFJH_13825at 2914.451 kb on + strand, within OLJFJH_13825at 2914.451 kb on + strand, within OLJFJH_13825at 2914.676 kb on + strandat 2914.761 kb on - strandat 2914.792 kb on + strand, within OLJFJH_13830at 2914.824 kb on + strand, within OLJFJH_13830at 2914.860 kb on + strand, within OLJFJH_13830at 2914.908 kb on + strand, within OLJFJH_13830at 2914.908 kb on + strand, within OLJFJH_13830at 2914.909 kb on - strand, within OLJFJH_13830at 2914.909 kb on - strand, within OLJFJH_13830at 2914.925 kb on + strand, within OLJFJH_13830at 2914.926 kb on - strand, within OLJFJH_13830at 2915.065 kb on + strand, within OLJFJH_13830at 2915.065 kb on + strand, within OLJFJH_13830at 2915.066 kb on - strand, within OLJFJH_13830at 2915.196 kb on + strand, within OLJFJH_13830at 2915.208 kb on + strand, within OLJFJH_13830at 2915.368 kb on - strand, within OLJFJH_13830at 2915.514 kb on + strandat 2915.515 kb on - strandat 2915.515 kb on - strandat 2915.552 kb on + strandat 2915.553 kb on - strandat 2915.555 kb on - strandat 2915.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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2,913,034 - OLJFJH_13820 0.83 -0.5
2,913,037 + OLJFJH_13820 0.83 +0.8
2,913,037 + OLJFJH_13820 0.83 -1.7
2,913,037 + OLJFJH_13820 0.83 -0.4
2,913,187 + OLJFJH_13820 0.87 -0.2
2,913,187 + OLJFJH_13820 0.87 -0.6
2,913,275 + OLJFJH_13820 0.89 +0.8
2,913,279 + OLJFJH_13820 0.89 +1.3
2,913,280 - OLJFJH_13820 0.89 -0.3
2,913,365 + -0.2
2,913,365 + +0.5
2,913,366 - +0.4
2,913,487 - -1.0
2,913,534 + -0.3
2,913,534 + +0.3
2,913,902 - OLJFJH_13825 0.19 -0.1
2,913,929 + OLJFJH_13825 0.23 -1.5
2,913,930 - OLJFJH_13825 0.23 -0.5
2,913,992 - OLJFJH_13825 0.30 +0.3
2,913,992 - OLJFJH_13825 0.30 +1.1
2,913,992 - OLJFJH_13825 0.30 +5.0
2,913,995 + OLJFJH_13825 0.30 +0.0
2,913,996 - OLJFJH_13825 0.30 -1.0
2,914,084 - OLJFJH_13825 0.40 +4.0
2,914,104 + OLJFJH_13825 0.43 -0.1
2,914,104 + OLJFJH_13825 0.43 +0.2
2,914,105 - OLJFJH_13825 0.43 +0.2
2,914,105 - OLJFJH_13825 0.43 -0.6
2,914,146 + OLJFJH_13825 0.47 -0.9
2,914,206 - OLJFJH_13825 0.54 +2.9
2,914,206 - OLJFJH_13825 0.54 -0.8
2,914,347 + OLJFJH_13825 0.71 -0.4
2,914,347 + OLJFJH_13825 0.71 +0.7
2,914,347 + OLJFJH_13825 0.71 -1.0
2,914,347 + OLJFJH_13825 0.71 +1.8
2,914,347 + OLJFJH_13825 0.71 +0.5
2,914,417 + OLJFJH_13825 0.79 -0.8
2,914,418 - OLJFJH_13825 0.79 +1.1
2,914,429 + OLJFJH_13825 0.80 -1.6
2,914,430 - OLJFJH_13825 0.80 +0.8
2,914,451 + OLJFJH_13825 0.83 -0.3
2,914,451 + OLJFJH_13825 0.83 +8.0
2,914,451 + OLJFJH_13825 0.83 +0.5
2,914,676 + +0.4
2,914,761 - -0.1
2,914,792 + OLJFJH_13830 0.12 +1.3
2,914,824 + OLJFJH_13830 0.16 -0.0
2,914,860 + OLJFJH_13830 0.21 -1.5
2,914,908 + OLJFJH_13830 0.27 -0.2
2,914,908 + OLJFJH_13830 0.27 +0.4
2,914,909 - OLJFJH_13830 0.27 +1.0
2,914,909 - OLJFJH_13830 0.27 +0.1
2,914,925 + OLJFJH_13830 0.29 +0.5
2,914,926 - OLJFJH_13830 0.29 +0.1
2,915,065 + OLJFJH_13830 0.46 +3.4
2,915,065 + OLJFJH_13830 0.46 +0.5
2,915,066 - OLJFJH_13830 0.46 +0.5
2,915,196 + OLJFJH_13830 0.62 +0.0
2,915,208 + OLJFJH_13830 0.64 -0.3
2,915,368 - OLJFJH_13830 0.84 +0.0
2,915,514 + -0.0
2,915,515 - -0.2
2,915,515 - +0.2
2,915,552 + +0.1
2,915,553 - +0.9
2,915,555 - -1.0
2,915,583 - +0.0

Or see this region's nucleotide sequence