Strain Fitness in Erwinia amylovora T8 around OLJFJH_11570

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11565 and OLJFJH_11570 are separated by 13 nucleotides OLJFJH_11565: OLJFJH_11565 - phosphotransferase RcsD, at 2,420,073 to 2,422,730 _11565 OLJFJH_11570: OLJFJH_11570 - MFS transporter, at 2,422,744 to 2,423,190 _11570 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -1 0 1 2 3 4at 2421.831 kb on - strand, within OLJFJH_11565at 2421.875 kb on + strand, within OLJFJH_11565at 2421.876 kb on - strand, within OLJFJH_11565at 2421.938 kb on + strand, within OLJFJH_11565at 2422.007 kb on + strand, within OLJFJH_11565at 2422.020 kb on - strand, within OLJFJH_11565at 2422.112 kb on - strand, within OLJFJH_11565at 2422.130 kb on + strand, within OLJFJH_11565at 2422.131 kb on - strand, within OLJFJH_11565at 2422.131 kb on - strand, within OLJFJH_11565at 2422.131 kb on - strand, within OLJFJH_11565at 2422.131 kb on - strand, within OLJFJH_11565at 2422.141 kb on - strand, within OLJFJH_11565at 2422.229 kb on + strand, within OLJFJH_11565at 2422.230 kb on - strand, within OLJFJH_11565at 2422.310 kb on - strand, within OLJFJH_11565at 2422.376 kb on + strand, within OLJFJH_11565at 2422.377 kb on - strand, within OLJFJH_11565at 2422.444 kb on + strand, within OLJFJH_11565at 2422.444 kb on + strand, within OLJFJH_11565at 2422.447 kb on + strand, within OLJFJH_11565at 2422.447 kb on + strand, within OLJFJH_11565at 2422.640 kb on + strandat 2422.692 kb on + strandat 2422.718 kb on + strandat 2422.745 kb on + strandat 2422.745 kb on + strandat 2422.746 kb on - strandat 2422.752 kb on + strandat 2422.780 kb on + strandat 2422.832 kb on - strand, within OLJFJH_11570at 2422.872 kb on + strand, within OLJFJH_11570at 2422.873 kb on - strand, within OLJFJH_11570at 2422.887 kb on + strand, within OLJFJH_11570at 2422.888 kb on - strand, within OLJFJH_11570at 2423.294 kb on - strandat 2423.298 kb on + strandat 2423.307 kb on - strandat 2423.377 kb on - strandat 2423.571 kb on - strandat 2423.835 kb on - strandat 2423.858 kb on + strandat 2423.859 kb on - strandat 2423.902 kb on - strandat 2423.908 kb on + strandat 2424.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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2,421,831 - OLJFJH_11565 0.66 +0.8
2,421,875 + OLJFJH_11565 0.68 +1.0
2,421,876 - OLJFJH_11565 0.68 +1.4
2,421,938 + OLJFJH_11565 0.70 -0.5
2,422,007 + OLJFJH_11565 0.73 +0.5
2,422,020 - OLJFJH_11565 0.73 +1.8
2,422,112 - OLJFJH_11565 0.77 +3.0
2,422,130 + OLJFJH_11565 0.77 +0.2
2,422,131 - OLJFJH_11565 0.77 +1.0
2,422,131 - OLJFJH_11565 0.77 +2.9
2,422,131 - OLJFJH_11565 0.77 +3.5
2,422,131 - OLJFJH_11565 0.77 -0.6
2,422,141 - OLJFJH_11565 0.78 +2.0
2,422,229 + OLJFJH_11565 0.81 +0.7
2,422,230 - OLJFJH_11565 0.81 -0.3
2,422,310 - OLJFJH_11565 0.84 +4.0
2,422,376 + OLJFJH_11565 0.87 +3.5
2,422,377 - OLJFJH_11565 0.87 -1.1
2,422,444 + OLJFJH_11565 0.89 +2.0
2,422,444 + OLJFJH_11565 0.89 +1.0
2,422,447 + OLJFJH_11565 0.89 +2.8
2,422,447 + OLJFJH_11565 0.89 +3.2
2,422,640 + +3.5
2,422,692 + +2.1
2,422,718 + +2.6
2,422,745 + +3.9
2,422,745 + +1.2
2,422,746 - +1.8
2,422,752 + -0.3
2,422,780 + +4.7
2,422,832 - OLJFJH_11570 0.20 -0.5
2,422,872 + OLJFJH_11570 0.29 +0.5
2,422,873 - OLJFJH_11570 0.29 +1.7
2,422,887 + OLJFJH_11570 0.32 +2.7
2,422,888 - OLJFJH_11570 0.32 -0.8
2,423,294 - +0.1
2,423,298 + +2.0
2,423,307 - -0.6
2,423,377 - -0.5
2,423,571 - -0.6
2,423,835 - -0.3
2,423,858 + -0.7
2,423,859 - -0.7
2,423,902 - -1.2
2,423,908 + -1.1
2,424,118 - -0.4

Or see this region's nucleotide sequence