Strain Fitness in Erwinia amylovora T8 around OLJFJH_10360

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10355 and OLJFJH_10360 are separated by 156 nucleotidesOLJFJH_10360 and OLJFJH_10365 are separated by 139 nucleotides OLJFJH_10355: OLJFJH_10355 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 2,135,409 to 2,136,134 _10355 OLJFJH_10360: OLJFJH_10360 - Fe-S cluster assembly transcriptional regulator IscR, at 2,136,291 to 2,136,788 _10360 OLJFJH_10365: OLJFJH_10365 - IscS subfamily cysteine desulfurase, at 2,136,928 to 2,138,127 _10365 Position (kb) 2136 2137Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2135.363 kb on + strandat 2135.377 kb on + strandat 2135.378 kb on - strandat 2135.408 kb on + strandat 2135.408 kb on + strandat 2135.409 kb on - strandat 2135.409 kb on - strandat 2135.409 kb on - strandat 2135.498 kb on - strand, within OLJFJH_10355at 2135.509 kb on - strand, within OLJFJH_10355at 2135.509 kb on - strand, within OLJFJH_10355at 2135.601 kb on - strand, within OLJFJH_10355at 2135.701 kb on + strand, within OLJFJH_10355at 2135.826 kb on + strand, within OLJFJH_10355at 2135.827 kb on - strand, within OLJFJH_10355at 2135.868 kb on + strand, within OLJFJH_10355at 2135.887 kb on - strand, within OLJFJH_10355at 2135.920 kb on - strand, within OLJFJH_10355at 2135.920 kb on - strand, within OLJFJH_10355at 2135.920 kb on - strand, within OLJFJH_10355at 2135.973 kb on - strand, within OLJFJH_10355at 2136.029 kb on - strand, within OLJFJH_10355at 2136.029 kb on - strand, within OLJFJH_10355at 2136.140 kb on + strandat 2136.253 kb on - strandat 2136.380 kb on + strand, within OLJFJH_10360at 2136.411 kb on + strand, within OLJFJH_10360at 2136.662 kb on + strand, within OLJFJH_10360at 2136.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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2,135,363 + -0.7
2,135,377 + +0.6
2,135,378 - +0.0
2,135,408 + -0.2
2,135,408 + -0.2
2,135,409 - -0.8
2,135,409 - +0.0
2,135,409 - -0.5
2,135,498 - OLJFJH_10355 0.12 +0.0
2,135,509 - OLJFJH_10355 0.14 +0.5
2,135,509 - OLJFJH_10355 0.14 +2.1
2,135,601 - OLJFJH_10355 0.26 -0.1
2,135,701 + OLJFJH_10355 0.40 +2.1
2,135,826 + OLJFJH_10355 0.57 -0.0
2,135,827 - OLJFJH_10355 0.58 +5.4
2,135,868 + OLJFJH_10355 0.63 -0.8
2,135,887 - OLJFJH_10355 0.66 -0.7
2,135,920 - OLJFJH_10355 0.70 -0.2
2,135,920 - OLJFJH_10355 0.70 -0.5
2,135,920 - OLJFJH_10355 0.70 -0.6
2,135,973 - OLJFJH_10355 0.78 -1.3
2,136,029 - OLJFJH_10355 0.85 -0.2
2,136,029 - OLJFJH_10355 0.85 -0.6
2,136,140 + -0.1
2,136,253 - -0.3
2,136,380 + OLJFJH_10360 0.18 -2.3
2,136,411 + OLJFJH_10360 0.24 -0.7
2,136,662 + OLJFJH_10360 0.74 -1.8
2,136,870 + +2.0

Or see this region's nucleotide sequence