Strain Fitness in Erwinia amylovora T8 around OLJFJH_10360
Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 |
---|---|---|---|---|---|
remove | |||||
2,135,363 | + | -0.7 | |||
2,135,377 | + | +0.6 | |||
2,135,378 | - | +0.0 | |||
2,135,408 | + | -0.2 | |||
2,135,408 | + | -0.2 | |||
2,135,409 | - | -0.8 | |||
2,135,409 | - | +0.0 | |||
2,135,409 | - | -0.5 | |||
2,135,498 | - | OLJFJH_10355 | 0.12 | +0.0 | |
2,135,509 | - | OLJFJH_10355 | 0.14 | +0.5 | |
2,135,509 | - | OLJFJH_10355 | 0.14 | +2.1 | |
2,135,601 | - | OLJFJH_10355 | 0.26 | -0.1 | |
2,135,701 | + | OLJFJH_10355 | 0.40 | +2.1 | |
2,135,826 | + | OLJFJH_10355 | 0.57 | -0.0 | |
2,135,827 | - | OLJFJH_10355 | 0.58 | +5.4 | |
2,135,868 | + | OLJFJH_10355 | 0.63 | -0.8 | |
2,135,887 | - | OLJFJH_10355 | 0.66 | -0.7 | |
2,135,920 | - | OLJFJH_10355 | 0.70 | -0.2 | |
2,135,920 | - | OLJFJH_10355 | 0.70 | -0.5 | |
2,135,920 | - | OLJFJH_10355 | 0.70 | -0.6 | |
2,135,973 | - | OLJFJH_10355 | 0.78 | -1.3 | |
2,136,029 | - | OLJFJH_10355 | 0.85 | -0.2 | |
2,136,029 | - | OLJFJH_10355 | 0.85 | -0.6 | |
2,136,140 | + | -0.1 | |||
2,136,253 | - | -0.3 | |||
2,136,380 | + | OLJFJH_10360 | 0.18 | -2.3 | |
2,136,411 | + | OLJFJH_10360 | 0.24 | -0.7 | |
2,136,662 | + | OLJFJH_10360 | 0.74 | -1.8 | |
2,136,870 | + | +2.0 |
Or see this region's nucleotide sequence