Strain Fitness in Erwinia amylovora T8 around OLJFJH_10065

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10060 and OLJFJH_10065 are separated by 12 nucleotidesOLJFJH_10065 and OLJFJH_10070 are separated by 21 nucleotidesOLJFJH_10070 and OLJFJH_10075 are separated by 64 nucleotides OLJFJH_10060: OLJFJH_10060 - flagellar hook protein FlgE, at 2,073,050 to 2,074,282 _10060 OLJFJH_10065: OLJFJH_10065 - flagellar biosynthesis protein FlgF, at 2,074,295 to 2,075,032 _10065 OLJFJH_10070: OLJFJH_10070 - flagellar basal-body rod protein FlgG, at 2,075,054 to 2,075,836 _10070 OLJFJH_10075: OLJFJH_10075 - flagellar basal body L-ring protein FlgH, at 2,075,901 to 2,076,614 _10075 Position (kb) 2074 2075 2076Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2073.324 kb on - strand, within OLJFJH_10060at 2073.326 kb on + strand, within OLJFJH_10060at 2073.327 kb on - strand, within OLJFJH_10060at 2073.327 kb on - strand, within OLJFJH_10060at 2073.365 kb on + strand, within OLJFJH_10060at 2073.365 kb on + strand, within OLJFJH_10060at 2073.367 kb on + strand, within OLJFJH_10060at 2073.367 kb on + strand, within OLJFJH_10060at 2073.367 kb on + strand, within OLJFJH_10060at 2073.367 kb on + strand, within OLJFJH_10060at 2073.367 kb on + strand, within OLJFJH_10060at 2073.368 kb on - strand, within OLJFJH_10060at 2073.368 kb on - strand, within OLJFJH_10060at 2073.368 kb on - strand, within OLJFJH_10060at 2073.370 kb on + strand, within OLJFJH_10060at 2073.371 kb on - strand, within OLJFJH_10060at 2073.578 kb on - strand, within OLJFJH_10060at 2073.644 kb on + strand, within OLJFJH_10060at 2073.644 kb on + strand, within OLJFJH_10060at 2073.644 kb on + strand, within OLJFJH_10060at 2073.644 kb on + strand, within OLJFJH_10060at 2073.645 kb on - strand, within OLJFJH_10060at 2073.645 kb on - strand, within OLJFJH_10060at 2073.645 kb on - strand, within OLJFJH_10060at 2073.645 kb on - strand, within OLJFJH_10060at 2073.647 kb on + strand, within OLJFJH_10060at 2073.648 kb on - strand, within OLJFJH_10060at 2073.935 kb on + strand, within OLJFJH_10060at 2073.935 kb on + strand, within OLJFJH_10060at 2073.936 kb on - strand, within OLJFJH_10060at 2073.981 kb on - strand, within OLJFJH_10060at 2074.193 kb on - strandat 2074.193 kb on - strandat 2074.193 kb on - strandat 2074.211 kb on - strandat 2074.214 kb on + strandat 2074.275 kb on + strandat 2074.276 kb on - strandat 2074.276 kb on - strandat 2074.276 kb on - strandat 2074.310 kb on + strandat 2074.310 kb on + strandat 2074.311 kb on - strandat 2074.311 kb on - strandat 2074.311 kb on - strandat 2074.311 kb on - strandat 2074.311 kb on - strandat 2074.363 kb on + strandat 2074.369 kb on + strand, within OLJFJH_10065at 2074.496 kb on - strand, within OLJFJH_10065at 2074.606 kb on + strand, within OLJFJH_10065at 2074.607 kb on - strand, within OLJFJH_10065at 2074.837 kb on + strand, within OLJFJH_10065at 2074.960 kb on + strandat 2075.017 kb on - strandat 2075.017 kb on - strandat 2075.020 kb on - strandat 2075.020 kb on - strandat 2075.290 kb on + strand, within OLJFJH_10070at 2075.290 kb on + strand, within OLJFJH_10070at 2075.291 kb on - strand, within OLJFJH_10070at 2075.393 kb on + strand, within OLJFJH_10070at 2075.394 kb on - strand, within OLJFJH_10070at 2075.396 kb on - strand, within OLJFJH_10070at 2075.588 kb on - strand, within OLJFJH_10070at 2075.705 kb on + strand, within OLJFJH_10070at 2075.705 kb on + strand, within OLJFJH_10070at 2075.706 kb on - strand, within OLJFJH_10070at 2075.742 kb on + strand, within OLJFJH_10070at 2075.743 kb on - strand, within OLJFJH_10070at 2075.743 kb on - strand, within OLJFJH_10070at 2075.743 kb on - strand, within OLJFJH_10070at 2075.786 kb on - strandat 2075.814 kb on + strandat 2075.834 kb on + strandat 2075.834 kb on + strandat 2075.916 kb on - strandat 2075.988 kb on - strand, within OLJFJH_10075at 2075.988 kb on - strand, within OLJFJH_10075

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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2,073,324 - OLJFJH_10060 0.22 +0.2
2,073,326 + OLJFJH_10060 0.22 +1.0
2,073,327 - OLJFJH_10060 0.22 -0.2
2,073,327 - OLJFJH_10060 0.22 +0.0
2,073,365 + OLJFJH_10060 0.26 +0.4
2,073,365 + OLJFJH_10060 0.26 -0.1
2,073,367 + OLJFJH_10060 0.26 -0.9
2,073,367 + OLJFJH_10060 0.26 -0.4
2,073,367 + OLJFJH_10060 0.26 -0.7
2,073,367 + OLJFJH_10060 0.26 +0.0
2,073,367 + OLJFJH_10060 0.26 +2.5
2,073,368 - OLJFJH_10060 0.26 +0.2
2,073,368 - OLJFJH_10060 0.26 +1.9
2,073,368 - OLJFJH_10060 0.26 +0.7
2,073,370 + OLJFJH_10060 0.26 -1.2
2,073,371 - OLJFJH_10060 0.26 +0.0
2,073,578 - OLJFJH_10060 0.43 +0.4
2,073,644 + OLJFJH_10060 0.48 -0.6
2,073,644 + OLJFJH_10060 0.48 -0.5
2,073,644 + OLJFJH_10060 0.48 +1.8
2,073,644 + OLJFJH_10060 0.48 -0.6
2,073,645 - OLJFJH_10060 0.48 -0.2
2,073,645 - OLJFJH_10060 0.48 +0.2
2,073,645 - OLJFJH_10060 0.48 +0.5
2,073,645 - OLJFJH_10060 0.48 +1.1
2,073,647 + OLJFJH_10060 0.48 +0.8
2,073,648 - OLJFJH_10060 0.48 -0.1
2,073,935 + OLJFJH_10060 0.72 -0.8
2,073,935 + OLJFJH_10060 0.72 -0.5
2,073,936 - OLJFJH_10060 0.72 -0.1
2,073,981 - OLJFJH_10060 0.76 -0.3
2,074,193 - +0.5
2,074,193 - -1.1
2,074,193 - -0.4
2,074,211 - +3.3
2,074,214 + -0.1
2,074,275 + +0.9
2,074,276 - +0.0
2,074,276 - +0.7
2,074,276 - -0.2
2,074,310 + +0.4
2,074,310 + -0.1
2,074,311 - -0.7
2,074,311 - -1.6
2,074,311 - +0.5
2,074,311 - +0.2
2,074,311 - -0.5
2,074,363 + -0.2
2,074,369 + OLJFJH_10065 0.10 -0.3
2,074,496 - OLJFJH_10065 0.27 -1.7
2,074,606 + OLJFJH_10065 0.42 +3.3
2,074,607 - OLJFJH_10065 0.42 +1.0
2,074,837 + OLJFJH_10065 0.73 -0.4
2,074,960 + -0.0
2,075,017 - -0.0
2,075,017 - -0.2
2,075,020 - -2.2
2,075,020 - -0.7
2,075,290 + OLJFJH_10070 0.30 +0.8
2,075,290 + OLJFJH_10070 0.30 +3.9
2,075,291 - OLJFJH_10070 0.30 -0.2
2,075,393 + OLJFJH_10070 0.43 +1.5
2,075,394 - OLJFJH_10070 0.43 -0.2
2,075,396 - OLJFJH_10070 0.44 +0.7
2,075,588 - OLJFJH_10070 0.68 -0.3
2,075,705 + OLJFJH_10070 0.83 -0.8
2,075,705 + OLJFJH_10070 0.83 +0.3
2,075,706 - OLJFJH_10070 0.83 +1.8
2,075,742 + OLJFJH_10070 0.88 +1.4
2,075,743 - OLJFJH_10070 0.88 -1.3
2,075,743 - OLJFJH_10070 0.88 -2.8
2,075,743 - OLJFJH_10070 0.88 -0.0
2,075,786 - +0.4
2,075,814 + -1.0
2,075,834 + +0.6
2,075,834 + -0.3
2,075,916 - -0.4
2,075,988 - OLJFJH_10075 0.12 +0.2
2,075,988 - OLJFJH_10075 0.12 +3.4

Or see this region's nucleotide sequence