Strain Fitness in Erwinia amylovora T8 around OLJFJH_09810

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09805 and OLJFJH_09810 are separated by 165 nucleotidesOLJFJH_09810 and OLJFJH_09815 overlap by 1 nucleotidesOLJFJH_09815 and OLJFJH_09820 are separated by 175 nucleotides OLJFJH_09805: OLJFJH_09805 - multidrug efflux MFS transporter periplasmic adaptor subunit EmrA, at 2,025,701 to 2,026,873 _09805 OLJFJH_09810: OLJFJH_09810 - transcriptional repressor MprA, at 2,027,039 to 2,027,569 _09810 OLJFJH_09815: OLJFJH_09815 - hypothetical protein, at 2,027,569 to 2,027,859 _09815 OLJFJH_09820: OLJFJH_09820 - MFS transporter, at 2,028,035 to 2,029,219 _09820 Position (kb) 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2026.039 kb on - strand, within OLJFJH_09805at 2026.039 kb on - strand, within OLJFJH_09805at 2026.039 kb on - strand, within OLJFJH_09805at 2026.039 kb on - strand, within OLJFJH_09805at 2026.112 kb on + strand, within OLJFJH_09805at 2026.112 kb on + strand, within OLJFJH_09805at 2026.123 kb on + strand, within OLJFJH_09805at 2026.196 kb on + strand, within OLJFJH_09805at 2026.196 kb on + strand, within OLJFJH_09805at 2026.196 kb on + strand, within OLJFJH_09805at 2026.196 kb on + strand, within OLJFJH_09805at 2026.197 kb on - strand, within OLJFJH_09805at 2026.197 kb on - strand, within OLJFJH_09805at 2026.200 kb on + strand, within OLJFJH_09805at 2026.200 kb on + strand, within OLJFJH_09805at 2026.201 kb on - strand, within OLJFJH_09805at 2026.240 kb on + strand, within OLJFJH_09805at 2026.241 kb on - strand, within OLJFJH_09805at 2026.332 kb on + strand, within OLJFJH_09805at 2026.332 kb on + strand, within OLJFJH_09805at 2026.332 kb on + strand, within OLJFJH_09805at 2026.333 kb on - strand, within OLJFJH_09805at 2026.333 kb on - strand, within OLJFJH_09805at 2026.333 kb on - strand, within OLJFJH_09805at 2026.445 kb on + strand, within OLJFJH_09805at 2026.610 kb on + strand, within OLJFJH_09805at 2026.611 kb on - strand, within OLJFJH_09805at 2026.611 kb on - strand, within OLJFJH_09805at 2026.708 kb on - strand, within OLJFJH_09805at 2026.708 kb on - strand, within OLJFJH_09805at 2026.736 kb on + strand, within OLJFJH_09805at 2026.736 kb on + strand, within OLJFJH_09805at 2026.737 kb on - strand, within OLJFJH_09805at 2026.762 kb on - strandat 2026.762 kb on - strandat 2026.787 kb on + strandat 2026.832 kb on - strandat 2026.866 kb on - strandat 2026.866 kb on - strandat 2026.877 kb on - strandat 2026.984 kb on - strandat 2027.025 kb on + strandat 2027.036 kb on + strandat 2027.036 kb on + strandat 2027.101 kb on + strand, within OLJFJH_09810at 2027.170 kb on + strand, within OLJFJH_09810at 2027.170 kb on + strand, within OLJFJH_09810at 2027.170 kb on + strand, within OLJFJH_09810at 2027.300 kb on - strand, within OLJFJH_09810at 2027.489 kb on - strand, within OLJFJH_09810at 2027.489 kb on - strand, within OLJFJH_09810at 2027.572 kb on + strandat 2027.604 kb on + strand, within OLJFJH_09815at 2027.710 kb on - strand, within OLJFJH_09815at 2027.710 kb on - strand, within OLJFJH_09815at 2027.736 kb on + strand, within OLJFJH_09815at 2027.762 kb on + strand, within OLJFJH_09815at 2027.763 kb on - strand, within OLJFJH_09815at 2027.860 kb on - strandat 2027.882 kb on - strandat 2027.883 kb on + strandat 2027.883 kb on + strandat 2027.883 kb on + strandat 2027.883 kb on + strandat 2027.883 kb on + strandat 2027.883 kb on + strandat 2027.884 kb on - strandat 2027.899 kb on + strandat 2028.116 kb on + strandat 2028.117 kb on - strandat 2028.186 kb on + strand, within OLJFJH_09820at 2028.186 kb on + strand, within OLJFJH_09820at 2028.196 kb on + strand, within OLJFJH_09820at 2028.196 kb on + strand, within OLJFJH_09820at 2028.198 kb on + strand, within OLJFJH_09820at 2028.232 kb on + strand, within OLJFJH_09820at 2028.241 kb on - strand, within OLJFJH_09820at 2028.262 kb on + strand, within OLJFJH_09820at 2028.262 kb on + strand, within OLJFJH_09820at 2028.263 kb on - strand, within OLJFJH_09820at 2028.263 kb on - strand, within OLJFJH_09820at 2028.266 kb on + strand, within OLJFJH_09820at 2028.266 kb on + strand, within OLJFJH_09820at 2028.266 kb on + strand, within OLJFJH_09820at 2028.266 kb on + strand, within OLJFJH_09820at 2028.267 kb on - strand, within OLJFJH_09820at 2028.267 kb on - strand, within OLJFJH_09820at 2028.267 kb on - strand, within OLJFJH_09820at 2028.267 kb on - strand, within OLJFJH_09820at 2028.267 kb on - strand, within OLJFJH_09820at 2028.404 kb on - strand, within OLJFJH_09820at 2028.404 kb on - strand, within OLJFJH_09820at 2028.465 kb on - strand, within OLJFJH_09820at 2028.487 kb on - strand, within OLJFJH_09820at 2028.487 kb on - strand, within OLJFJH_09820

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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2,026,039 - OLJFJH_09805 0.29 -0.8
2,026,039 - OLJFJH_09805 0.29 +0.1
2,026,039 - OLJFJH_09805 0.29 +0.2
2,026,039 - OLJFJH_09805 0.29 +1.9
2,026,112 + OLJFJH_09805 0.35 -0.7
2,026,112 + OLJFJH_09805 0.35 -0.2
2,026,123 + OLJFJH_09805 0.36 -0.4
2,026,196 + OLJFJH_09805 0.42 -0.1
2,026,196 + OLJFJH_09805 0.42 -0.1
2,026,196 + OLJFJH_09805 0.42 -0.5
2,026,196 + OLJFJH_09805 0.42 -0.7
2,026,197 - OLJFJH_09805 0.42 +5.0
2,026,197 - OLJFJH_09805 0.42 -0.5
2,026,200 + OLJFJH_09805 0.43 -0.6
2,026,200 + OLJFJH_09805 0.43 -0.5
2,026,201 - OLJFJH_09805 0.43 +6.1
2,026,240 + OLJFJH_09805 0.46 +1.3
2,026,241 - OLJFJH_09805 0.46 -0.4
2,026,332 + OLJFJH_09805 0.54 -0.9
2,026,332 + OLJFJH_09805 0.54 +1.4
2,026,332 + OLJFJH_09805 0.54 +2.6
2,026,333 - OLJFJH_09805 0.54 -0.8
2,026,333 - OLJFJH_09805 0.54 +0.9
2,026,333 - OLJFJH_09805 0.54 +0.7
2,026,445 + OLJFJH_09805 0.63 -0.3
2,026,610 + OLJFJH_09805 0.77 +3.2
2,026,611 - OLJFJH_09805 0.78 +0.1
2,026,611 - OLJFJH_09805 0.78 +0.0
2,026,708 - OLJFJH_09805 0.86 -2.0
2,026,708 - OLJFJH_09805 0.86 -0.9
2,026,736 + OLJFJH_09805 0.88 +0.7
2,026,736 + OLJFJH_09805 0.88 -0.3
2,026,737 - OLJFJH_09805 0.88 -0.1
2,026,762 - +2.2
2,026,762 - +0.6
2,026,787 + +0.0
2,026,832 - +0.3
2,026,866 - -1.4
2,026,866 - -2.2
2,026,877 - -0.5
2,026,984 - +0.1
2,027,025 + -0.5
2,027,036 + +0.4
2,027,036 + +0.2
2,027,101 + OLJFJH_09810 0.12 +0.1
2,027,170 + OLJFJH_09810 0.25 +3.0
2,027,170 + OLJFJH_09810 0.25 -0.8
2,027,170 + OLJFJH_09810 0.25 +0.5
2,027,300 - OLJFJH_09810 0.49 -1.3
2,027,489 - OLJFJH_09810 0.85 +0.9
2,027,489 - OLJFJH_09810 0.85 +1.0
2,027,572 + -1.5
2,027,604 + OLJFJH_09815 0.12 +1.2
2,027,710 - OLJFJH_09815 0.48 +1.1
2,027,710 - OLJFJH_09815 0.48 +0.4
2,027,736 + OLJFJH_09815 0.57 -1.5
2,027,762 + OLJFJH_09815 0.66 +0.3
2,027,763 - OLJFJH_09815 0.67 +3.4
2,027,860 - -0.6
2,027,882 - -0.4
2,027,883 + -0.3
2,027,883 + +1.0
2,027,883 + +2.0
2,027,883 + -1.5
2,027,883 + -0.3
2,027,883 + +0.1
2,027,884 - -0.4
2,027,899 + -0.1
2,028,116 + +0.4
2,028,117 - -0.4
2,028,186 + OLJFJH_09820 0.13 -0.9
2,028,186 + OLJFJH_09820 0.13 +0.1
2,028,196 + OLJFJH_09820 0.14 +3.5
2,028,196 + OLJFJH_09820 0.14 +0.4
2,028,198 + OLJFJH_09820 0.14 -1.2
2,028,232 + OLJFJH_09820 0.17 +0.5
2,028,241 - OLJFJH_09820 0.17 -1.2
2,028,262 + OLJFJH_09820 0.19 -0.2
2,028,262 + OLJFJH_09820 0.19 +0.0
2,028,263 - OLJFJH_09820 0.19 -0.7
2,028,263 - OLJFJH_09820 0.19 -1.2
2,028,266 + OLJFJH_09820 0.19 -0.5
2,028,266 + OLJFJH_09820 0.19 -0.0
2,028,266 + OLJFJH_09820 0.19 -0.8
2,028,266 + OLJFJH_09820 0.19 -0.2
2,028,267 - OLJFJH_09820 0.20 -0.8
2,028,267 - OLJFJH_09820 0.20 -1.2
2,028,267 - OLJFJH_09820 0.20 -0.6
2,028,267 - OLJFJH_09820 0.20 +1.2
2,028,267 - OLJFJH_09820 0.20 -0.7
2,028,404 - OLJFJH_09820 0.31 -0.6
2,028,404 - OLJFJH_09820 0.31 -0.3
2,028,465 - OLJFJH_09820 0.36 -0.6
2,028,487 - OLJFJH_09820 0.38 -0.5
2,028,487 - OLJFJH_09820 0.38 +1.1

Or see this region's nucleotide sequence