Strain Fitness in Erwinia amylovora T8 around OLJFJH_09725

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09720 and OLJFJH_09725 are separated by 134 nucleotidesOLJFJH_09725 and OLJFJH_09730 overlap by 1 nucleotidesOLJFJH_09730 and OLJFJH_09740 are separated by 125 nucleotides OLJFJH_09720: OLJFJH_09720 - outer membrane protein assembly factor BamD, at 2,004,189 to 2,004,920 _09720 OLJFJH_09725: OLJFJH_09725 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 2,005,055 to 2,006,032 _09725 OLJFJH_09730: OLJFJH_09730 - purine nucleoside phosphorylase YfiH, at 2,006,032 to 2,006,760 _09730 OLJFJH_09740: OLJFJH_09740 - ATP-dependent chaperone ClpB, at 2,006,886 to 2,009,459 _09740 Position (kb) 2005 2006 2007Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2004.099 kb on + strandat 2004.100 kb on - strandat 2004.100 kb on - strandat 2004.240 kb on + strandat 2004.241 kb on - strandat 2005.001 kb on - strandat 2005.001 kb on - strandat 2005.001 kb on - strandat 2005.001 kb on - strandat 2005.005 kb on + strandat 2005.050 kb on + strandat 2005.050 kb on + strandat 2005.051 kb on - strandat 2005.051 kb on - strandat 2005.113 kb on + strandat 2005.113 kb on + strandat 2005.113 kb on + strandat 2005.114 kb on - strandat 2005.249 kb on + strand, within OLJFJH_09725at 2005.566 kb on - strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.771 kb on + strand, within OLJFJH_09725at 2005.772 kb on - strand, within OLJFJH_09725at 2005.772 kb on - strand, within OLJFJH_09725at 2005.772 kb on - strand, within OLJFJH_09725at 2005.772 kb on - strand, within OLJFJH_09725at 2005.772 kb on - strand, within OLJFJH_09725at 2005.781 kb on - strand, within OLJFJH_09725at 2005.781 kb on - strand, within OLJFJH_09725at 2005.781 kb on - strand, within OLJFJH_09725at 2005.914 kb on - strand, within OLJFJH_09725at 2006.238 kb on - strand, within OLJFJH_09730at 2006.255 kb on + strand, within OLJFJH_09730at 2006.256 kb on - strand, within OLJFJH_09730at 2006.256 kb on - strand, within OLJFJH_09730at 2006.302 kb on + strand, within OLJFJH_09730at 2006.303 kb on - strand, within OLJFJH_09730at 2006.360 kb on + strand, within OLJFJH_09730at 2006.474 kb on + strand, within OLJFJH_09730at 2006.474 kb on + strand, within OLJFJH_09730at 2006.475 kb on - strand, within OLJFJH_09730at 2006.475 kb on - strand, within OLJFJH_09730at 2006.475 kb on - strand, within OLJFJH_09730at 2006.676 kb on + strand, within OLJFJH_09730at 2006.676 kb on + strand, within OLJFJH_09730at 2006.676 kb on + strand, within OLJFJH_09730at 2006.677 kb on - strand, within OLJFJH_09730at 2006.677 kb on - strand, within OLJFJH_09730at 2006.677 kb on - strand, within OLJFJH_09730at 2006.708 kb on - strandat 2006.734 kb on - strandat 2006.734 kb on - strandat 2006.734 kb on - strandat 2006.756 kb on + strandat 2006.757 kb on - strandat 2006.759 kb on - strandat 2006.759 kb on - strandat 2006.764 kb on - strandat 2006.764 kb on - strandat 2006.818 kb on + strandat 2006.849 kb on - strandat 2006.885 kb on + strandat 2006.903 kb on + strandat 2006.903 kb on + strandat 2006.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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2,004,099 + +1.8
2,004,100 - -0.6
2,004,100 - +1.7
2,004,240 + -1.2
2,004,241 - -0.2
2,005,001 - +0.1
2,005,001 - +1.5
2,005,001 - -0.3
2,005,001 - -1.1
2,005,005 + -0.5
2,005,050 + +0.4
2,005,050 + +0.5
2,005,051 - -0.2
2,005,051 - -1.9
2,005,113 + -1.3
2,005,113 + -1.6
2,005,113 + -1.3
2,005,114 - +1.5
2,005,249 + OLJFJH_09725 0.20 -0.2
2,005,566 - OLJFJH_09725 0.52 -2.0
2,005,771 + OLJFJH_09725 0.73 -1.1
2,005,771 + OLJFJH_09725 0.73 -1.9
2,005,771 + OLJFJH_09725 0.73 -1.2
2,005,771 + OLJFJH_09725 0.73 -0.3
2,005,771 + OLJFJH_09725 0.73 -2.8
2,005,771 + OLJFJH_09725 0.73 -1.1
2,005,771 + OLJFJH_09725 0.73 -2.1
2,005,771 + OLJFJH_09725 0.73 -3.0
2,005,771 + OLJFJH_09725 0.73 -1.6
2,005,772 - OLJFJH_09725 0.73 +0.4
2,005,772 - OLJFJH_09725 0.73 -1.2
2,005,772 - OLJFJH_09725 0.73 -1.5
2,005,772 - OLJFJH_09725 0.73 -0.2
2,005,772 - OLJFJH_09725 0.73 -0.5
2,005,781 - OLJFJH_09725 0.74 -0.8
2,005,781 - OLJFJH_09725 0.74 -1.6
2,005,781 - OLJFJH_09725 0.74 -0.7
2,005,914 - OLJFJH_09725 0.88 +0.0
2,006,238 - OLJFJH_09730 0.28 -2.0
2,006,255 + OLJFJH_09730 0.31 -0.6
2,006,256 - OLJFJH_09730 0.31 +0.2
2,006,256 - OLJFJH_09730 0.31 -0.5
2,006,302 + OLJFJH_09730 0.37 -0.5
2,006,303 - OLJFJH_09730 0.37 -0.4
2,006,360 + OLJFJH_09730 0.45 -0.7
2,006,474 + OLJFJH_09730 0.61 -0.3
2,006,474 + OLJFJH_09730 0.61 +0.1
2,006,475 - OLJFJH_09730 0.61 +0.9
2,006,475 - OLJFJH_09730 0.61 +0.1
2,006,475 - OLJFJH_09730 0.61 +0.1
2,006,676 + OLJFJH_09730 0.88 -0.4
2,006,676 + OLJFJH_09730 0.88 -0.9
2,006,676 + OLJFJH_09730 0.88 +0.1
2,006,677 - OLJFJH_09730 0.88 -0.1
2,006,677 - OLJFJH_09730 0.88 -1.0
2,006,677 - OLJFJH_09730 0.88 +0.2
2,006,708 - +1.6
2,006,734 - +1.5
2,006,734 - +0.0
2,006,734 - +0.4
2,006,756 + -0.7
2,006,757 - -1.3
2,006,759 - -0.1
2,006,759 - -0.8
2,006,764 - +1.0
2,006,764 - +0.4
2,006,818 + -2.4
2,006,849 - +0.0
2,006,885 + -1.1
2,006,903 + -0.6
2,006,903 + -0.0
2,006,903 + -0.9

Or see this region's nucleotide sequence