Strain Fitness in Erwinia amylovora T8 around OLJFJH_09675

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09665 and OLJFJH_09670 are separated by 56 nucleotidesOLJFJH_09670 and OLJFJH_09675 are separated by 277 nucleotidesOLJFJH_09675 and OLJFJH_09680 are separated by 310 nucleotides OLJFJH_09665: OLJFJH_09665 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,994,463 to 1,995,254 _09665 OLJFJH_09670: OLJFJH_09670 - 50S ribosomal protein L19, at 1,995,311 to 1,995,658 _09670 OLJFJH_09675: OLJFJH_09675 - hypothetical protein, at 1,995,936 to 1,996,193 _09675 OLJFJH_09680: OLJFJH_09680 - hypothetical protein, at 1,996,504 to 1,997,250 _09680 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -1 0 1 2at 1995.736 kb on - strandat 1995.852 kb on + strandat 1996.120 kb on - strand, within OLJFJH_09675at 1996.183 kb on - strandat 1996.341 kb on - strandat 1996.407 kb on + strandat 1996.447 kb on - strandat 1996.462 kb on + strandat 1996.468 kb on - strandat 1996.568 kb on + strandat 1996.628 kb on + strand, within OLJFJH_09680at 1996.798 kb on - strand, within OLJFJH_09680at 1996.845 kb on - strand, within OLJFJH_09680at 1996.978 kb on + strand, within OLJFJH_09680at 1996.980 kb on + strand, within OLJFJH_09680at 1996.981 kb on - strand, within OLJFJH_09680at 1997.184 kb on + strandat 1997.184 kb on + strandat 1997.185 kb on - strandat 1997.188 kb on + strandat 1997.188 kb on + strandat 1997.188 kb on + strandat 1997.193 kb on + strandat 1997.193 kb on + strandat 1997.193 kb on + strandat 1997.193 kb on + strandat 1997.193 kb on + strandat 1997.193 kb on + strandat 1997.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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1,995,736 - +1.2
1,995,852 + -0.7
1,996,120 - OLJFJH_09675 0.71 +1.0
1,996,183 - -0.8
1,996,341 - +0.6
1,996,407 + +1.6
1,996,447 - +0.2
1,996,462 + +1.1
1,996,468 - -0.8
1,996,568 + +2.3
1,996,628 + OLJFJH_09680 0.17 -0.3
1,996,798 - OLJFJH_09680 0.39 +0.5
1,996,845 - OLJFJH_09680 0.46 -0.9
1,996,978 + OLJFJH_09680 0.63 +0.4
1,996,980 + OLJFJH_09680 0.64 -0.2
1,996,981 - OLJFJH_09680 0.64 -1.2
1,997,184 + +1.0
1,997,184 + -0.1
1,997,185 - +0.8
1,997,188 + -0.8
1,997,188 + +0.2
1,997,188 + -1.0
1,997,193 + +0.8
1,997,193 + +0.3
1,997,193 + -0.0
1,997,193 + -0.4
1,997,193 + +0.4
1,997,193 + +1.3
1,997,193 + -0.2

Or see this region's nucleotide sequence