Strain Fitness in Erwinia amylovora T8 around OLJFJH_08355

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08350 and OLJFJH_08355 are separated by 715 nucleotidesOLJFJH_08355 and OLJFJH_08360 are separated by 356 nucleotidesOLJFJH_08360 and OLJFJH_08365 overlap by 23 nucleotides OLJFJH_08350: OLJFJH_08350 - plasmid replication protein, at 1,720,235 to 1,720,477 _08350 OLJFJH_08355: OLJFJH_08355 - hypothetical protein, at 1,721,193 to 1,721,336 _08355 OLJFJH_08360: OLJFJH_08360 - DUF2778 domain-containing protein, at 1,721,693 to 1,722,211 _08360 OLJFJH_08365: OLJFJH_08365 - hypothetical protein, at 1,722,189 to 1,722,452 _08365 Position (kb) 1721 1722Strain fitness (log2 ratio) -2 -1 0 1 2at 1720.755 kb on + strandat 1720.871 kb on + strandat 1720.901 kb on - strandat 1721.160 kb on - strandat 1721.241 kb on - strand, within OLJFJH_08355at 1721.241 kb on - strand, within OLJFJH_08355at 1721.535 kb on - strandat 1721.538 kb on + strandat 1721.658 kb on - strandat 1721.821 kb on + strand, within OLJFJH_08360at 1721.972 kb on + strand, within OLJFJH_08360at 1721.973 kb on - strand, within OLJFJH_08360at 1722.068 kb on - strand, within OLJFJH_08360at 1722.130 kb on + strand, within OLJFJH_08360at 1722.131 kb on - strand, within OLJFJH_08360at 1722.282 kb on + strand, within OLJFJH_08365at 1722.306 kb on - strand, within OLJFJH_08365

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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1,720,755 + -1.5
1,720,871 + +0.3
1,720,901 - -0.6
1,721,160 - +0.4
1,721,241 - OLJFJH_08355 0.33 +0.2
1,721,241 - OLJFJH_08355 0.33 +2.0
1,721,535 - -0.7
1,721,538 + -2.4
1,721,658 - -0.6
1,721,821 + OLJFJH_08360 0.25 -1.6
1,721,972 + OLJFJH_08360 0.54 +0.1
1,721,973 - OLJFJH_08360 0.54 +0.5
1,722,068 - OLJFJH_08360 0.72 -0.7
1,722,130 + OLJFJH_08360 0.84 +0.1
1,722,131 - OLJFJH_08360 0.84 -0.7
1,722,282 + OLJFJH_08365 0.35 -0.6
1,722,306 - OLJFJH_08365 0.44 +0.7

Or see this region's nucleotide sequence