Strain Fitness in Erwinia amylovora T8 around OLJFJH_08340

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08340 and OLJFJH_08345 are separated by 176 nucleotides OLJFJH_08340: OLJFJH_08340 - hypothetical protein, at 1,718,823 to 1,718,927 _08340 OLJFJH_08345: OLJFJH_08345 - hypothetical protein, at 1,719,104 to 1,719,355 _08345 Position (kb) 1718 1719Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1718.008 kb on - strandat 1718.046 kb on + strandat 1718.327 kb on - strandat 1718.383 kb on + strandat 1718.540 kb on - strandat 1718.854 kb on + strand, within OLJFJH_08340at 1719.029 kb on - strandat 1719.041 kb on + strandat 1719.121 kb on + strandat 1719.343 kb on + strandat 1719.343 kb on + strandat 1719.473 kb on + strandat 1719.474 kb on - strandat 1719.559 kb on + strandat 1719.577 kb on + strandat 1719.601 kb on - strandat 1719.638 kb on + strandat 1719.638 kb on + strandat 1719.639 kb on - strandat 1719.670 kb on + strandat 1719.671 kb on - strandat 1719.856 kb on + strandat 1719.884 kb on + strandat 1719.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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1,718,008 - +2.1
1,718,046 + -0.7
1,718,327 - -1.4
1,718,383 + +0.3
1,718,540 - -1.3
1,718,854 + OLJFJH_08340 0.30 +1.4
1,719,029 - -0.6
1,719,041 + -1.8
1,719,121 + +0.0
1,719,343 + -0.5
1,719,343 + +0.3
1,719,473 + -0.7
1,719,474 - -0.0
1,719,559 + -1.1
1,719,577 + -0.2
1,719,601 - -0.3
1,719,638 + +3.2
1,719,638 + -0.2
1,719,639 - -0.3
1,719,670 + +0.5
1,719,671 - +1.0
1,719,856 + +0.2
1,719,884 + -0.4
1,719,885 - +1.3

Or see this region's nucleotide sequence