Strain Fitness in Erwinia amylovora T8 around OLJFJH_07335

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07330 and OLJFJH_07335 are separated by 293 nucleotidesOLJFJH_07335 and OLJFJH_07340 are separated by 156 nucleotidesOLJFJH_07340 and OLJFJH_07345 are separated by 362 nucleotides OLJFJH_07330: OLJFJH_07330 - aspartate carbamoyltransferase, at 1,494,545 to 1,495,480 _07330 OLJFJH_07335: OLJFJH_07335 - ornithine carbamoyltransferase, at 1,495,774 to 1,496,784 _07335 OLJFJH_07340: OLJFJH_07340 - ribonuclease E inhibitor RraB, at 1,496,941 to 1,497,363 _07340 OLJFJH_07345: OLJFJH_07345 - GNAT family N-acetyltransferase, at 1,497,726 to 1,498,229 _07345 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1494.799 kb on + strand, within OLJFJH_07330at 1494.801 kb on + strand, within OLJFJH_07330at 1494.801 kb on + strand, within OLJFJH_07330at 1494.801 kb on + strand, within OLJFJH_07330at 1494.801 kb on + strand, within OLJFJH_07330at 1494.801 kb on + strand, within OLJFJH_07330at 1494.801 kb on + strand, within OLJFJH_07330at 1494.802 kb on - strand, within OLJFJH_07330at 1494.802 kb on - strand, within OLJFJH_07330at 1494.802 kb on - strand, within OLJFJH_07330at 1494.809 kb on - strand, within OLJFJH_07330at 1494.887 kb on - strand, within OLJFJH_07330at 1494.887 kb on - strand, within OLJFJH_07330at 1494.887 kb on - strand, within OLJFJH_07330at 1494.888 kb on + strand, within OLJFJH_07330at 1494.889 kb on - strand, within OLJFJH_07330at 1494.889 kb on - strand, within OLJFJH_07330at 1495.049 kb on - strand, within OLJFJH_07330at 1495.185 kb on + strand, within OLJFJH_07330at 1495.185 kb on + strand, within OLJFJH_07330at 1495.186 kb on - strand, within OLJFJH_07330at 1495.186 kb on - strand, within OLJFJH_07330at 1495.186 kb on - strand, within OLJFJH_07330at 1495.193 kb on - strand, within OLJFJH_07330at 1495.204 kb on + strand, within OLJFJH_07330at 1495.204 kb on + strand, within OLJFJH_07330at 1495.204 kb on + strand, within OLJFJH_07330at 1495.205 kb on - strand, within OLJFJH_07330at 1495.244 kb on - strand, within OLJFJH_07330at 1495.244 kb on - strand, within OLJFJH_07330at 1495.354 kb on + strand, within OLJFJH_07330at 1495.355 kb on - strand, within OLJFJH_07330at 1495.355 kb on - strand, within OLJFJH_07330at 1495.450 kb on + strandat 1495.450 kb on + strandat 1495.453 kb on + strandat 1495.453 kb on + strandat 1495.466 kb on + strandat 1495.466 kb on + strandat 1495.709 kb on + strandat 1495.710 kb on - strandat 1495.711 kb on + strandat 1495.711 kb on + strandat 1495.711 kb on + strandat 1495.712 kb on - strandat 1495.776 kb on - strandat 1495.819 kb on - strandat 1495.819 kb on - strandat 1495.907 kb on + strand, within OLJFJH_07335at 1495.908 kb on - strand, within OLJFJH_07335at 1495.908 kb on - strand, within OLJFJH_07335at 1496.013 kb on + strand, within OLJFJH_07335at 1496.057 kb on - strand, within OLJFJH_07335at 1496.096 kb on + strand, within OLJFJH_07335at 1496.097 kb on - strand, within OLJFJH_07335at 1496.100 kb on + strand, within OLJFJH_07335at 1496.100 kb on + strand, within OLJFJH_07335at 1496.101 kb on - strand, within OLJFJH_07335at 1496.117 kb on - strand, within OLJFJH_07335at 1496.304 kb on - strand, within OLJFJH_07335at 1496.304 kb on - strand, within OLJFJH_07335at 1496.323 kb on - strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.483 kb on + strand, within OLJFJH_07335at 1496.484 kb on - strand, within OLJFJH_07335at 1496.484 kb on - strand, within OLJFJH_07335at 1496.484 kb on - strand, within OLJFJH_07335at 1496.484 kb on - strand, within OLJFJH_07335at 1496.484 kb on - strand, within OLJFJH_07335at 1496.484 kb on - strand, within OLJFJH_07335at 1496.485 kb on + strand, within OLJFJH_07335at 1496.486 kb on - strand, within OLJFJH_07335at 1496.486 kb on - strand, within OLJFJH_07335at 1496.486 kb on - strand, within OLJFJH_07335at 1496.486 kb on - strand, within OLJFJH_07335at 1496.515 kb on - strand, within OLJFJH_07335at 1496.558 kb on + strand, within OLJFJH_07335at 1496.558 kb on + strand, within OLJFJH_07335at 1496.558 kb on + strand, within OLJFJH_07335at 1496.559 kb on - strand, within OLJFJH_07335at 1496.559 kb on - strand, within OLJFJH_07335at 1496.771 kb on + strandat 1496.772 kb on - strandat 1496.772 kb on - strandat 1496.908 kb on + strandat 1496.918 kb on - strandat 1496.918 kb on - strandat 1496.926 kb on + strandat 1496.926 kb on + strandat 1496.957 kb on + strandat 1497.034 kb on + strand, within OLJFJH_07340at 1497.035 kb on - strand, within OLJFJH_07340at 1497.035 kb on - strand, within OLJFJH_07340at 1497.175 kb on - strand, within OLJFJH_07340at 1497.195 kb on + strand, within OLJFJH_07340at 1497.196 kb on - strand, within OLJFJH_07340at 1497.262 kb on + strand, within OLJFJH_07340at 1497.263 kb on - strand, within OLJFJH_07340at 1497.280 kb on + strand, within OLJFJH_07340at 1497.280 kb on + strand, within OLJFJH_07340at 1497.281 kb on - strand, within OLJFJH_07340at 1497.281 kb on - strand, within OLJFJH_07340at 1497.281 kb on - strand, within OLJFJH_07340at 1497.346 kb on - strandat 1497.490 kb on + strandat 1497.624 kb on - strandat 1497.624 kb on - strandat 1497.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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1,494,799 + OLJFJH_07330 0.27 -1.4
1,494,801 + OLJFJH_07330 0.27 -1.8
1,494,801 + OLJFJH_07330 0.27 -2.6
1,494,801 + OLJFJH_07330 0.27 -0.9
1,494,801 + OLJFJH_07330 0.27 -1.3
1,494,801 + OLJFJH_07330 0.27 -2.7
1,494,801 + OLJFJH_07330 0.27 -1.8
1,494,802 - OLJFJH_07330 0.27 -1.9
1,494,802 - OLJFJH_07330 0.27 -2.0
1,494,802 - OLJFJH_07330 0.27 -1.8
1,494,809 - OLJFJH_07330 0.28 +0.1
1,494,887 - OLJFJH_07330 0.37 -1.7
1,494,887 - OLJFJH_07330 0.37 -2.6
1,494,887 - OLJFJH_07330 0.37 -0.6
1,494,888 + OLJFJH_07330 0.37 -1.9
1,494,889 - OLJFJH_07330 0.37 -1.6
1,494,889 - OLJFJH_07330 0.37 -2.2
1,495,049 - OLJFJH_07330 0.54 -0.2
1,495,185 + OLJFJH_07330 0.68 -1.3
1,495,185 + OLJFJH_07330 0.68 -2.1
1,495,186 - OLJFJH_07330 0.68 -1.7
1,495,186 - OLJFJH_07330 0.68 -3.9
1,495,186 - OLJFJH_07330 0.68 -0.4
1,495,193 - OLJFJH_07330 0.69 -1.8
1,495,204 + OLJFJH_07330 0.70 +0.1
1,495,204 + OLJFJH_07330 0.70 +0.9
1,495,204 + OLJFJH_07330 0.70 -3.1
1,495,205 - OLJFJH_07330 0.71 -3.1
1,495,244 - OLJFJH_07330 0.75 -2.8
1,495,244 - OLJFJH_07330 0.75 -2.1
1,495,354 + OLJFJH_07330 0.86 -2.4
1,495,355 - OLJFJH_07330 0.87 -3.1
1,495,355 - OLJFJH_07330 0.87 -2.2
1,495,450 + -0.6
1,495,450 + -3.0
1,495,453 + -3.4
1,495,453 + -1.1
1,495,466 + -2.1
1,495,466 + -2.0
1,495,709 + +0.8
1,495,710 - -1.2
1,495,711 + -0.8
1,495,711 + +1.7
1,495,711 + +0.6
1,495,712 - +0.2
1,495,776 - +0.8
1,495,819 - -2.8
1,495,819 - -2.1
1,495,907 + OLJFJH_07335 0.13 -3.6
1,495,908 - OLJFJH_07335 0.13 -2.2
1,495,908 - OLJFJH_07335 0.13 -2.6
1,496,013 + OLJFJH_07335 0.24 -0.4
1,496,057 - OLJFJH_07335 0.28 -2.3
1,496,096 + OLJFJH_07335 0.32 -3.9
1,496,097 - OLJFJH_07335 0.32 -4.5
1,496,100 + OLJFJH_07335 0.32 -0.2
1,496,100 + OLJFJH_07335 0.32 -3.9
1,496,101 - OLJFJH_07335 0.32 -3.0
1,496,117 - OLJFJH_07335 0.34 -0.9
1,496,304 - OLJFJH_07335 0.52 -2.0
1,496,304 - OLJFJH_07335 0.52 -2.8
1,496,323 - OLJFJH_07335 0.54 -2.8
1,496,483 + OLJFJH_07335 0.70 -3.5
1,496,483 + OLJFJH_07335 0.70 -3.0
1,496,483 + OLJFJH_07335 0.70 -1.8
1,496,483 + OLJFJH_07335 0.70 -2.8
1,496,483 + OLJFJH_07335 0.70 -2.8
1,496,483 + OLJFJH_07335 0.70 -2.2
1,496,483 + OLJFJH_07335 0.70 -2.2
1,496,483 + OLJFJH_07335 0.70 -2.2
1,496,483 + OLJFJH_07335 0.70 -2.1
1,496,484 - OLJFJH_07335 0.70 -4.0
1,496,484 - OLJFJH_07335 0.70 -3.0
1,496,484 - OLJFJH_07335 0.70 -2.4
1,496,484 - OLJFJH_07335 0.70 -2.9
1,496,484 - OLJFJH_07335 0.70 -2.4
1,496,484 - OLJFJH_07335 0.70 -0.9
1,496,485 + OLJFJH_07335 0.70 -3.1
1,496,486 - OLJFJH_07335 0.70 -2.5
1,496,486 - OLJFJH_07335 0.70 -1.9
1,496,486 - OLJFJH_07335 0.70 -3.6
1,496,486 - OLJFJH_07335 0.70 -1.7
1,496,515 - OLJFJH_07335 0.73 -4.1
1,496,558 + OLJFJH_07335 0.78 -1.0
1,496,558 + OLJFJH_07335 0.78 +0.6
1,496,558 + OLJFJH_07335 0.78 -2.8
1,496,559 - OLJFJH_07335 0.78 -1.3
1,496,559 - OLJFJH_07335 0.78 -3.1
1,496,771 + -2.4
1,496,772 - -2.6
1,496,772 - -2.7
1,496,908 + -0.0
1,496,918 - +0.1
1,496,918 - -0.3
1,496,926 + -1.0
1,496,926 + +1.0
1,496,957 + +0.5
1,497,034 + OLJFJH_07340 0.22 -0.3
1,497,035 - OLJFJH_07340 0.22 +0.3
1,497,035 - OLJFJH_07340 0.22 -1.4
1,497,175 - OLJFJH_07340 0.55 +0.4
1,497,195 + OLJFJH_07340 0.60 -1.9
1,497,196 - OLJFJH_07340 0.60 +0.5
1,497,262 + OLJFJH_07340 0.76 -0.7
1,497,263 - OLJFJH_07340 0.76 -0.9
1,497,280 + OLJFJH_07340 0.80 -0.6
1,497,280 + OLJFJH_07340 0.80 -0.2
1,497,281 - OLJFJH_07340 0.80 -0.5
1,497,281 - OLJFJH_07340 0.80 -0.5
1,497,281 - OLJFJH_07340 0.80 +4.2
1,497,346 - -0.7
1,497,490 + +0.2
1,497,624 - -0.1
1,497,624 - +1.1
1,497,624 - +0.4

Or see this region's nucleotide sequence