Strain Fitness in Erwinia amylovora T8 around OLJFJH_05710

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05700 and OLJFJH_05705 are separated by 271 nucleotidesOLJFJH_05705 and OLJFJH_05710 are separated by 1 nucleotidesOLJFJH_05710 and OLJFJH_05715 are separated by 245 nucleotides OLJFJH_05700: OLJFJH_05700 - site-specific integrase, at 1,157,706 to 1,158,992 _05700 OLJFJH_05705: OLJFJH_05705 - hypothetical protein, at 1,159,264 to 1,159,572 _05705 OLJFJH_05710: OLJFJH_05710 - AlpA family phage regulatory protein, at 1,159,574 to 1,159,810 _05710 OLJFJH_05715: OLJFJH_05715 - DUF3800 domain-containing protein, at 1,160,056 to 1,160,787 _05715 Position (kb) 1159 1160Strain fitness (log2 ratio) -1 0 1 2at 1158.609 kb on + strand, within OLJFJH_05700at 1158.917 kb on + strandat 1159.535 kb on - strand, within OLJFJH_05705at 1159.601 kb on - strand, within OLJFJH_05710at 1159.663 kb on + strand, within OLJFJH_05710at 1159.664 kb on - strand, within OLJFJH_05710at 1159.716 kb on + strand, within OLJFJH_05710at 1159.849 kb on - strandat 1159.849 kb on - strandat 1159.888 kb on + strandat 1159.888 kb on + strandat 1159.889 kb on - strandat 1159.896 kb on + strandat 1159.954 kb on + strandat 1160.056 kb on - strandat 1160.149 kb on - strand, within OLJFJH_05715

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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1,158,609 + OLJFJH_05700 0.70 +2.4
1,158,917 + -1.1
1,159,535 - OLJFJH_05705 0.88 +0.1
1,159,601 - OLJFJH_05710 0.11 +0.0
1,159,663 + OLJFJH_05710 0.38 +2.0
1,159,664 - OLJFJH_05710 0.38 +0.5
1,159,716 + OLJFJH_05710 0.60 +1.4
1,159,849 - -0.1
1,159,849 - +0.1
1,159,888 + -1.0
1,159,888 + -0.6
1,159,889 - +0.1
1,159,896 + -0.0
1,159,954 + -0.3
1,160,056 - +0.5
1,160,149 - OLJFJH_05715 0.13 -0.2

Or see this region's nucleotide sequence