Strain Fitness in Erwinia amylovora T8 around OLJFJH_05660

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05655 and OLJFJH_05660 are separated by 243 nucleotidesOLJFJH_05660 and OLJFJH_05665 are separated by 3 nucleotidesOLJFJH_05665 and OLJFJH_05670 are separated by 59 nucleotides OLJFJH_05655: OLJFJH_05655 - relaxase/mobilization nuclease domain-containing protein, at 1,150,577 to 1,151,707 _05655 OLJFJH_05660: OLJFJH_05660 - DUF4755 domain-containing protein, at 1,151,951 to 1,152,535 _05660 OLJFJH_05665: OLJFJH_05665 - hypothetical protein, at 1,152,539 to 1,152,919 _05665 OLJFJH_05670: OLJFJH_05670 - hypothetical protein, at 1,152,979 to 1,153,716 _05670 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1150.956 kb on - strand, within OLJFJH_05655at 1151.048 kb on - strand, within OLJFJH_05655at 1151.048 kb on - strand, within OLJFJH_05655at 1151.136 kb on + strand, within OLJFJH_05655at 1151.137 kb on - strand, within OLJFJH_05655at 1151.137 kb on - strand, within OLJFJH_05655at 1151.137 kb on - strand, within OLJFJH_05655at 1151.137 kb on - strand, within OLJFJH_05655at 1151.143 kb on + strand, within OLJFJH_05655at 1151.184 kb on + strand, within OLJFJH_05655at 1151.185 kb on - strand, within OLJFJH_05655at 1151.309 kb on - strand, within OLJFJH_05655at 1151.338 kb on + strand, within OLJFJH_05655at 1151.403 kb on + strand, within OLJFJH_05655at 1151.416 kb on + strand, within OLJFJH_05655at 1151.416 kb on + strand, within OLJFJH_05655at 1151.417 kb on - strand, within OLJFJH_05655at 1151.449 kb on + strand, within OLJFJH_05655at 1151.502 kb on - strand, within OLJFJH_05655at 1151.506 kb on + strand, within OLJFJH_05655at 1151.506 kb on + strand, within OLJFJH_05655at 1151.520 kb on + strand, within OLJFJH_05655at 1151.982 kb on - strandat 1152.027 kb on + strand, within OLJFJH_05660at 1152.115 kb on + strand, within OLJFJH_05660at 1152.116 kb on - strand, within OLJFJH_05660at 1152.119 kb on - strand, within OLJFJH_05660at 1152.149 kb on - strand, within OLJFJH_05660at 1152.239 kb on - strand, within OLJFJH_05660at 1152.424 kb on + strand, within OLJFJH_05660at 1152.571 kb on + strandat 1152.619 kb on + strand, within OLJFJH_05665at 1152.713 kb on - strand, within OLJFJH_05665at 1152.713 kb on - strand, within OLJFJH_05665at 1152.847 kb on + strand, within OLJFJH_05665at 1152.903 kb on + strandat 1152.903 kb on + strandat 1153.262 kb on + strand, within OLJFJH_05670at 1153.304 kb on + strand, within OLJFJH_05670at 1153.468 kb on + strand, within OLJFJH_05670

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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1,150,956 - OLJFJH_05655 0.34 -0.4
1,151,048 - OLJFJH_05655 0.42 -0.0
1,151,048 - OLJFJH_05655 0.42 -0.3
1,151,136 + OLJFJH_05655 0.49 +0.1
1,151,137 - OLJFJH_05655 0.50 +0.3
1,151,137 - OLJFJH_05655 0.50 +1.6
1,151,137 - OLJFJH_05655 0.50 -0.3
1,151,137 - OLJFJH_05655 0.50 -0.2
1,151,143 + OLJFJH_05655 0.50 -1.1
1,151,184 + OLJFJH_05655 0.54 +0.5
1,151,185 - OLJFJH_05655 0.54 -0.1
1,151,309 - OLJFJH_05655 0.65 +0.4
1,151,338 + OLJFJH_05655 0.67 +1.6
1,151,403 + OLJFJH_05655 0.73 +0.8
1,151,416 + OLJFJH_05655 0.74 +3.7
1,151,416 + OLJFJH_05655 0.74 +0.9
1,151,417 - OLJFJH_05655 0.74 +0.7
1,151,449 + OLJFJH_05655 0.77 -0.4
1,151,502 - OLJFJH_05655 0.82 +0.6
1,151,506 + OLJFJH_05655 0.82 -2.1
1,151,506 + OLJFJH_05655 0.82 +2.4
1,151,520 + OLJFJH_05655 0.83 -0.2
1,151,982 - +1.6
1,152,027 + OLJFJH_05660 0.13 +0.0
1,152,115 + OLJFJH_05660 0.28 -0.4
1,152,116 - OLJFJH_05660 0.28 -0.1
1,152,119 - OLJFJH_05660 0.29 +2.2
1,152,149 - OLJFJH_05660 0.34 -0.1
1,152,239 - OLJFJH_05660 0.49 +0.4
1,152,424 + OLJFJH_05660 0.81 +2.4
1,152,571 + +4.0
1,152,619 + OLJFJH_05665 0.21 -0.2
1,152,713 - OLJFJH_05665 0.46 -0.5
1,152,713 - OLJFJH_05665 0.46 +3.8
1,152,847 + OLJFJH_05665 0.81 +0.3
1,152,903 + +0.0
1,152,903 + +0.2
1,153,262 + OLJFJH_05670 0.38 +2.1
1,153,304 + OLJFJH_05670 0.44 +0.4
1,153,468 + OLJFJH_05670 0.66 -0.2

Or see this region's nucleotide sequence