Strain Fitness in Erwinia amylovora T8 around OLJFJH_04955

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04950 and OLJFJH_04955 are separated by 99 nucleotidesOLJFJH_04955 and OLJFJH_04960 overlap by 56 nucleotidesOLJFJH_04960 and OLJFJH_04965 are separated by 9 nucleotides OLJFJH_04950: OLJFJH_04950 - acetyltransferase, at 980,798 to 981,793 _04950 OLJFJH_04955: OLJFJH_04955 - hypothetical protein, at 981,893 to 982,078 _04955 OLJFJH_04960: OLJFJH_04960 - glycine--tRNA ligase subunit alpha, at 982,023 to 982,976 _04960 OLJFJH_04965: OLJFJH_04965 - Glycine--tRNA ligase beta subunit, at 982,986 to 985,055 _04965 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2at 980.912 kb on - strand, within OLJFJH_04950at 980.933 kb on - strand, within OLJFJH_04950at 981.005 kb on - strand, within OLJFJH_04950at 981.063 kb on - strand, within OLJFJH_04950at 981.078 kb on + strand, within OLJFJH_04950at 981.246 kb on + strand, within OLJFJH_04950at 981.247 kb on - strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.249 kb on + strand, within OLJFJH_04950at 981.250 kb on - strand, within OLJFJH_04950at 981.250 kb on - strand, within OLJFJH_04950at 981.250 kb on - strand, within OLJFJH_04950at 981.270 kb on + strand, within OLJFJH_04950at 981.271 kb on - strand, within OLJFJH_04950at 981.271 kb on - strand, within OLJFJH_04950at 981.392 kb on + strand, within OLJFJH_04950at 981.392 kb on + strand, within OLJFJH_04950at 981.393 kb on - strand, within OLJFJH_04950at 981.396 kb on - strand, within OLJFJH_04950at 981.411 kb on + strand, within OLJFJH_04950at 981.411 kb on + strand, within OLJFJH_04950at 981.412 kb on - strand, within OLJFJH_04950at 981.412 kb on - strand, within OLJFJH_04950at 981.416 kb on - strand, within OLJFJH_04950at 981.471 kb on + strand, within OLJFJH_04950at 981.516 kb on + strand, within OLJFJH_04950at 981.517 kb on - strand, within OLJFJH_04950at 981.537 kb on + strand, within OLJFJH_04950at 981.538 kb on - strand, within OLJFJH_04950at 981.695 kb on + strandat 981.712 kb on - strandat 981.762 kb on - strandat 981.860 kb on - strandat 981.860 kb on - strandat 981.921 kb on - strand, within OLJFJH_04955at 981.921 kb on - strand, within OLJFJH_04955at 981.986 kb on - strand, within OLJFJH_04955

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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980,912 - OLJFJH_04950 0.11 -0.5
980,933 - OLJFJH_04950 0.14 -0.2
981,005 - OLJFJH_04950 0.21 -0.7
981,063 - OLJFJH_04950 0.27 +0.3
981,078 + OLJFJH_04950 0.28 -2.0
981,246 + OLJFJH_04950 0.45 +0.2
981,247 - OLJFJH_04950 0.45 -0.5
981,249 + OLJFJH_04950 0.45 -0.1
981,249 + OLJFJH_04950 0.45 -1.2
981,249 + OLJFJH_04950 0.45 -0.2
981,249 + OLJFJH_04950 0.45 +0.3
981,249 + OLJFJH_04950 0.45 +0.8
981,250 - OLJFJH_04950 0.45 -0.8
981,250 - OLJFJH_04950 0.45 -1.0
981,250 - OLJFJH_04950 0.45 +1.9
981,270 + OLJFJH_04950 0.47 -1.0
981,271 - OLJFJH_04950 0.47 +2.3
981,271 - OLJFJH_04950 0.47 +0.4
981,392 + OLJFJH_04950 0.60 -0.0
981,392 + OLJFJH_04950 0.60 +0.8
981,393 - OLJFJH_04950 0.60 +0.7
981,396 - OLJFJH_04950 0.60 -0.6
981,411 + OLJFJH_04950 0.62 +0.7
981,411 + OLJFJH_04950 0.62 -0.1
981,412 - OLJFJH_04950 0.62 -0.0
981,412 - OLJFJH_04950 0.62 -0.1
981,416 - OLJFJH_04950 0.62 +0.2
981,471 + OLJFJH_04950 0.68 +0.5
981,516 + OLJFJH_04950 0.72 +1.0
981,517 - OLJFJH_04950 0.72 -0.0
981,537 + OLJFJH_04950 0.74 -0.1
981,538 - OLJFJH_04950 0.74 -0.1
981,695 + -0.3
981,712 - -0.3
981,762 - +0.3
981,860 - -0.3
981,860 - +0.5
981,921 - OLJFJH_04955 0.15 +1.1
981,921 - OLJFJH_04955 0.15 +0.7
981,986 - OLJFJH_04955 0.50 +0.4

Or see this region's nucleotide sequence