Strain Fitness in Erwinia amylovora T8 around OLJFJH_04885

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_04875 and OLJFJH_04880 are separated by 112 nucleotidesOLJFJH_04880 and OLJFJH_04885 are separated by 277 nucleotidesOLJFJH_04885 and OLJFJH_04890 are separated by 428 nucleotides OLJFJH_04875: OLJFJH_04875 - ABC transporter substrate-binding protein, at 965,492 to 967,102 _04875 OLJFJH_04880: OLJFJH_04880 - hypothetical protein, at 967,215 to 967,346 _04880 OLJFJH_04885: OLJFJH_04885 - hypothetical protein, at 967,624 to 968,082 _04885 OLJFJH_04890: OLJFJH_04890 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 968,511 to 970,178 _04890 Position (kb) 967 968 969Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 966.662 kb on - strand, within OLJFJH_04875at 966.662 kb on - strand, within OLJFJH_04875at 966.678 kb on + strand, within OLJFJH_04875at 966.685 kb on - strand, within OLJFJH_04875at 966.685 kb on - strand, within OLJFJH_04875at 966.685 kb on - strand, within OLJFJH_04875at 966.708 kb on + strand, within OLJFJH_04875at 966.708 kb on + strand, within OLJFJH_04875at 966.709 kb on - strand, within OLJFJH_04875at 966.765 kb on - strand, within OLJFJH_04875at 966.829 kb on + strand, within OLJFJH_04875at 966.829 kb on + strand, within OLJFJH_04875at 966.830 kb on - strand, within OLJFJH_04875at 966.831 kb on + strand, within OLJFJH_04875at 966.831 kb on + strand, within OLJFJH_04875at 966.832 kb on - strand, within OLJFJH_04875at 966.922 kb on - strand, within OLJFJH_04875at 966.922 kb on - strand, within OLJFJH_04875at 966.945 kb on + strandat 966.945 kb on + strandat 966.945 kb on + strandat 966.961 kb on + strandat 966.961 kb on + strandat 966.962 kb on - strandat 967.006 kb on - strandat 967.006 kb on - strandat 967.033 kb on + strandat 967.034 kb on - strandat 967.107 kb on - strandat 967.109 kb on - strandat 967.116 kb on + strandat 967.117 kb on - strandat 967.159 kb on + strandat 967.182 kb on + strandat 967.183 kb on - strandat 967.457 kb on - strandat 967.494 kb on - strandat 967.571 kb on + strandat 967.571 kb on + strandat 967.572 kb on - strandat 967.764 kb on + strand, within OLJFJH_04885at 967.866 kb on + strand, within OLJFJH_04885at 967.869 kb on - strand, within OLJFJH_04885at 967.912 kb on + strand, within OLJFJH_04885at 967.996 kb on + strand, within OLJFJH_04885at 967.997 kb on - strand, within OLJFJH_04885at 967.997 kb on - strand, within OLJFJH_04885at 967.997 kb on - strand, within OLJFJH_04885at 968.057 kb on - strandat 968.134 kb on - strandat 968.377 kb on + strandat 968.416 kb on + strandat 968.417 kb on - strandat 968.531 kb on + strandat 968.531 kb on + strandat 968.534 kb on + strandat 968.534 kb on + strandat 968.535 kb on - strandat 968.545 kb on - strandat 968.640 kb on + strandat 968.641 kb on - strandat 968.641 kb on - strandat 968.660 kb on + strandat 968.660 kb on + strandat 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.681 kb on - strand, within OLJFJH_04890at 968.681 kb on - strand, within OLJFJH_04890at 968.681 kb on - strand, within OLJFJH_04890at 968.701 kb on - strand, within OLJFJH_04890at 968.736 kb on - strand, within OLJFJH_04890at 968.763 kb on - strand, within OLJFJH_04890at 968.860 kb on + strand, within OLJFJH_04890at 968.879 kb on - strand, within OLJFJH_04890at 968.925 kb on - strand, within OLJFJH_04890at 968.977 kb on + strand, within OLJFJH_04890at 968.978 kb on - strand, within OLJFJH_04890at 968.978 kb on - strand, within OLJFJH_04890at 969.000 kb on + strand, within OLJFJH_04890at 969.066 kb on - strand, within OLJFJH_04890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
remove
966,662 - OLJFJH_04875 0.73 -0.1
966,662 - OLJFJH_04875 0.73 +1.3
966,678 + OLJFJH_04875 0.74 -0.2
966,685 - OLJFJH_04875 0.74 -0.7
966,685 - OLJFJH_04875 0.74 -0.3
966,685 - OLJFJH_04875 0.74 +2.1
966,708 + OLJFJH_04875 0.75 -0.9
966,708 + OLJFJH_04875 0.75 -0.3
966,709 - OLJFJH_04875 0.76 +0.0
966,765 - OLJFJH_04875 0.79 -0.7
966,829 + OLJFJH_04875 0.83 -1.1
966,829 + OLJFJH_04875 0.83 -0.6
966,830 - OLJFJH_04875 0.83 +0.2
966,831 + OLJFJH_04875 0.83 +2.0
966,831 + OLJFJH_04875 0.83 -1.2
966,832 - OLJFJH_04875 0.83 -1.3
966,922 - OLJFJH_04875 0.89 -0.3
966,922 - OLJFJH_04875 0.89 -1.2
966,945 + +2.1
966,945 + +0.3
966,945 + -1.6
966,961 + -1.3
966,961 + +0.5
966,962 - +1.2
967,006 - -0.2
967,006 - -0.7
967,033 + -1.1
967,034 - -1.3
967,107 - -0.3
967,109 - +0.1
967,116 + -2.1
967,117 - +0.5
967,159 + +2.9
967,182 + -0.1
967,183 - +0.8
967,457 - -1.4
967,494 - +0.7
967,571 + -0.6
967,571 + +0.7
967,572 - -0.7
967,764 + OLJFJH_04885 0.31 +0.6
967,866 + OLJFJH_04885 0.53 +6.7
967,869 - OLJFJH_04885 0.53 +0.2
967,912 + OLJFJH_04885 0.63 -0.5
967,996 + OLJFJH_04885 0.81 +3.6
967,997 - OLJFJH_04885 0.81 +0.5
967,997 - OLJFJH_04885 0.81 +0.5
967,997 - OLJFJH_04885 0.81 +0.5
968,057 - -0.7
968,134 - -0.4
968,377 + +1.2
968,416 + +0.5
968,417 - -0.8
968,531 + +1.9
968,531 + -0.1
968,534 + +1.0
968,534 + +1.8
968,535 - +0.8
968,545 - -0.8
968,640 + -0.2
968,641 - +1.1
968,641 - -2.5
968,660 + -1.2
968,660 + +0.2
968,680 + OLJFJH_04890 0.10 -0.2
968,680 + OLJFJH_04890 0.10 -0.9
968,680 + OLJFJH_04890 0.10 +0.4
968,680 + OLJFJH_04890 0.10 +0.5
968,680 + OLJFJH_04890 0.10 -0.3
968,680 + OLJFJH_04890 0.10 -1.1
968,681 - OLJFJH_04890 0.10 -0.1
968,681 - OLJFJH_04890 0.10 -0.1
968,681 - OLJFJH_04890 0.10 -0.0
968,701 - OLJFJH_04890 0.11 -0.7
968,736 - OLJFJH_04890 0.13 -0.4
968,763 - OLJFJH_04890 0.15 +0.3
968,860 + OLJFJH_04890 0.21 +2.4
968,879 - OLJFJH_04890 0.22 -0.4
968,925 - OLJFJH_04890 0.25 +1.3
968,977 + OLJFJH_04890 0.28 +0.7
968,978 - OLJFJH_04890 0.28 +0.7
968,978 - OLJFJH_04890 0.28 +0.4
969,000 + OLJFJH_04890 0.29 -0.9
969,066 - OLJFJH_04890 0.33 +0.7

Or see this region's nucleotide sequence