Strain Fitness in Erwinia amylovora T8 around OLJFJH_04440

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04435 and OLJFJH_04440 are separated by 217 nucleotidesOLJFJH_04440 and OLJFJH_04445 are separated by 55 nucleotidesOLJFJH_04445 and OLJFJH_04450 are separated by 46 nucleotides OLJFJH_04435: OLJFJH_04435 - 5-dehydro-2-deoxygluconokinase, at 857,180 to 859,102 _04435 OLJFJH_04440: OLJFJH_04440 - MurR/RpiR family transcriptional regulator, at 859,320 to 860,171 _04440 OLJFJH_04445: OLJFJH_04445 - 5-deoxy-glucuronate isomerase, at 860,227 to 861,060 _04445 OLJFJH_04450: OLJFJH_04450 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 861,107 to 862,612 _04450 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 858.340 kb on + strand, within OLJFJH_04435at 858.341 kb on - strand, within OLJFJH_04435at 858.436 kb on + strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.600 kb on - strand, within OLJFJH_04435at 858.670 kb on + strand, within OLJFJH_04435at 858.671 kb on - strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.674 kb on - strand, within OLJFJH_04435at 858.674 kb on - strand, within OLJFJH_04435at 858.740 kb on + strand, within OLJFJH_04435at 858.740 kb on + strand, within OLJFJH_04435at 858.741 kb on - strand, within OLJFJH_04435at 858.743 kb on + strand, within OLJFJH_04435at 858.767 kb on + strand, within OLJFJH_04435at 858.768 kb on - strand, within OLJFJH_04435at 858.913 kb on + strandat 858.976 kb on + strandat 858.976 kb on + strandat 858.977 kb on - strandat 858.977 kb on - strandat 859.055 kb on + strandat 859.055 kb on + strandat 859.055 kb on + strandat 859.100 kb on + strandat 859.104 kb on + strandat 859.177 kb on + strandat 859.178 kb on - strandat 859.201 kb on - strandat 859.274 kb on + strandat 859.285 kb on - strandat 859.285 kb on - strandat 859.290 kb on - strandat 859.389 kb on - strandat 859.413 kb on + strand, within OLJFJH_04440at 859.414 kb on - strand, within OLJFJH_04440at 859.415 kb on + strand, within OLJFJH_04440at 859.584 kb on + strand, within OLJFJH_04440at 859.584 kb on + strand, within OLJFJH_04440at 859.585 kb on - strand, within OLJFJH_04440at 859.669 kb on + strand, within OLJFJH_04440at 859.669 kb on + strand, within OLJFJH_04440at 859.670 kb on - strand, within OLJFJH_04440at 859.673 kb on + strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.813 kb on - strand, within OLJFJH_04440at 859.821 kb on + strand, within OLJFJH_04440at 859.822 kb on - strand, within OLJFJH_04440at 859.822 kb on - strand, within OLJFJH_04440at 859.895 kb on + strand, within OLJFJH_04440at 859.932 kb on + strand, within OLJFJH_04440at 859.999 kb on + strand, within OLJFJH_04440at 860.000 kb on - strand, within OLJFJH_04440at 860.202 kb on - strandat 860.228 kb on + strandat 860.336 kb on + strand, within OLJFJH_04445at 860.337 kb on - strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.386 kb on + strand, within OLJFJH_04445at 860.448 kb on - strand, within OLJFJH_04445at 860.492 kb on + strand, within OLJFJH_04445at 860.493 kb on - strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.496 kb on - strand, within OLJFJH_04445at 860.496 kb on - strand, within OLJFJH_04445at 860.544 kb on + strand, within OLJFJH_04445at 860.544 kb on + strand, within OLJFJH_04445at 860.580 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.583 kb on - strand, within OLJFJH_04445at 860.583 kb on - strand, within OLJFJH_04445at 860.711 kb on - strand, within OLJFJH_04445at 860.848 kb on - strand, within OLJFJH_04445at 860.860 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.979 kb on - strandat 861.004 kb on - strandat 861.004 kb on - strandat 861.004 kb on - strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.007 kb on - strandat 861.007 kb on - strandat 861.007 kb on - strandat 861.047 kb on + strandat 861.047 kb on + strandat 861.048 kb on - strandat 861.048 kb on - strandat 861.052 kb on + strandat 861.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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858,340 + OLJFJH_04435 0.60 +0.2
858,341 - OLJFJH_04435 0.60 -0.1
858,436 + OLJFJH_04435 0.65 +1.0
858,437 - OLJFJH_04435 0.65 -0.2
858,437 - OLJFJH_04435 0.65 +1.2
858,437 - OLJFJH_04435 0.65 -0.5
858,437 - OLJFJH_04435 0.65 -0.5
858,600 - OLJFJH_04435 0.74 -0.8
858,670 + OLJFJH_04435 0.77 +1.3
858,671 - OLJFJH_04435 0.78 -0.3
858,673 + OLJFJH_04435 0.78 +0.5
858,673 + OLJFJH_04435 0.78 +0.1
858,673 + OLJFJH_04435 0.78 -0.0
858,674 - OLJFJH_04435 0.78 -0.5
858,674 - OLJFJH_04435 0.78 -0.5
858,740 + OLJFJH_04435 0.81 +2.4
858,740 + OLJFJH_04435 0.81 -0.7
858,741 - OLJFJH_04435 0.81 -0.4
858,743 + OLJFJH_04435 0.81 -0.2
858,767 + OLJFJH_04435 0.83 +0.0
858,768 - OLJFJH_04435 0.83 -0.2
858,913 + -1.9
858,976 + -0.1
858,976 + -1.0
858,977 - -1.2
858,977 - -1.2
859,055 + -0.1
859,055 + -0.5
859,055 + -0.8
859,100 + +0.8
859,104 + +1.6
859,177 + +2.2
859,178 - +0.9
859,201 - -1.0
859,274 + +1.3
859,285 - +3.4
859,285 - +4.0
859,290 - +2.9
859,389 - +3.1
859,413 + OLJFJH_04440 0.11 +3.1
859,414 - OLJFJH_04440 0.11 +3.3
859,415 + OLJFJH_04440 0.11 +3.9
859,584 + OLJFJH_04440 0.31 +3.5
859,584 + OLJFJH_04440 0.31 +2.6
859,585 - OLJFJH_04440 0.31 +3.2
859,669 + OLJFJH_04440 0.41 +3.9
859,669 + OLJFJH_04440 0.41 +3.8
859,670 - OLJFJH_04440 0.41 +3.6
859,673 + OLJFJH_04440 0.41 +3.8
859,674 - OLJFJH_04440 0.42 +2.4
859,674 - OLJFJH_04440 0.42 +2.8
859,674 - OLJFJH_04440 0.42 +2.3
859,773 + OLJFJH_04440 0.53 +3.0
859,773 + OLJFJH_04440 0.53 +3.1
859,773 + OLJFJH_04440 0.53 +3.5
859,773 + OLJFJH_04440 0.53 +4.0
859,773 + OLJFJH_04440 0.53 +3.1
859,773 + OLJFJH_04440 0.53 +2.7
859,774 - OLJFJH_04440 0.53 +2.8
859,774 - OLJFJH_04440 0.53 +4.4
859,774 - OLJFJH_04440 0.53 +2.4
859,813 - OLJFJH_04440 0.58 +3.8
859,821 + OLJFJH_04440 0.59 +1.6
859,822 - OLJFJH_04440 0.59 +3.1
859,822 - OLJFJH_04440 0.59 +3.5
859,895 + OLJFJH_04440 0.67 +3.7
859,932 + OLJFJH_04440 0.72 +7.6
859,999 + OLJFJH_04440 0.80 +3.2
860,000 - OLJFJH_04440 0.80 +3.2
860,202 - +0.4
860,228 + +0.7
860,336 + OLJFJH_04445 0.13 -0.6
860,337 - OLJFJH_04445 0.13 +0.4
860,339 + OLJFJH_04445 0.13 +0.8
860,339 + OLJFJH_04445 0.13 -1.7
860,339 + OLJFJH_04445 0.13 -1.9
860,339 + OLJFJH_04445 0.13 +0.6
860,339 + OLJFJH_04445 0.13 +3.0
860,339 + OLJFJH_04445 0.13 +0.3
860,339 + OLJFJH_04445 0.13 -0.5
860,339 + OLJFJH_04445 0.13 +0.6
860,339 + OLJFJH_04445 0.13 -1.1
860,340 - OLJFJH_04445 0.14 -0.6
860,340 - OLJFJH_04445 0.14 +1.0
860,340 - OLJFJH_04445 0.14 -0.2
860,343 + OLJFJH_04445 0.14 +1.1
860,343 + OLJFJH_04445 0.14 +0.5
860,343 + OLJFJH_04445 0.14 +0.5
860,343 + OLJFJH_04445 0.14 +1.3
860,344 - OLJFJH_04445 0.14 -0.6
860,344 - OLJFJH_04445 0.14 -0.8
860,344 - OLJFJH_04445 0.14 +1.6
860,344 - OLJFJH_04445 0.14 -0.2
860,386 + OLJFJH_04445 0.19 -0.5
860,448 - OLJFJH_04445 0.26 +0.3
860,492 + OLJFJH_04445 0.32 +0.3
860,493 - OLJFJH_04445 0.32 +0.0
860,495 + OLJFJH_04445 0.32 +1.4
860,495 + OLJFJH_04445 0.32 -0.7
860,495 + OLJFJH_04445 0.32 -0.6
860,495 + OLJFJH_04445 0.32 -1.4
860,495 + OLJFJH_04445 0.32 +0.4
860,496 - OLJFJH_04445 0.32 +0.3
860,496 - OLJFJH_04445 0.32 +0.6
860,544 + OLJFJH_04445 0.38 -1.0
860,544 + OLJFJH_04445 0.38 -0.5
860,580 + OLJFJH_04445 0.42 -1.0
860,582 + OLJFJH_04445 0.43 +0.9
860,582 + OLJFJH_04445 0.43 +0.1
860,582 + OLJFJH_04445 0.43 +0.1
860,582 + OLJFJH_04445 0.43 -1.7
860,583 - OLJFJH_04445 0.43 -0.2
860,583 - OLJFJH_04445 0.43 -0.5
860,711 - OLJFJH_04445 0.58 -0.9
860,848 - OLJFJH_04445 0.74 +0.0
860,860 + OLJFJH_04445 0.76 -0.4
860,960 + OLJFJH_04445 0.88 +0.6
860,960 + OLJFJH_04445 0.88 +0.0
860,960 + OLJFJH_04445 0.88 -0.5
860,979 - +3.2
861,004 - +0.0
861,004 - +0.8
861,004 - +0.2
861,006 + -2.1
861,006 + +0.5
861,006 + +1.3
861,006 + +0.8
861,007 - -0.2
861,007 - +0.9
861,007 - +2.8
861,047 + +0.8
861,047 + -1.9
861,048 - -0.4
861,048 - -0.2
861,052 + -0.8
861,088 - +0.6

Or see this region's nucleotide sequence