Strain Fitness in Erwinia amylovora T8 around OLJFJH_04050

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04045 and OLJFJH_04050 are separated by 471 nucleotidesOLJFJH_04050 and OLJFJH_04055 are separated by 86 nucleotidesOLJFJH_04055 and OLJFJH_04060 are separated by 60 nucleotidesOLJFJH_04060 and OLJFJH_04065 are separated by 52 nucleotides OLJFJH_04045: OLJFJH_04045 - MFS transporter TsgA, at 769,938 to 771,122 _04045 OLJFJH_04050: OLJFJH_04050 - cytosine deaminase, at 771,594 to 771,929 _04050 OLJFJH_04055: OLJFJH_04055 - hypothetical protein, at 772,016 to 772,321 _04055 OLJFJH_04060: OLJFJH_04060 - hypothetical protein, at 772,382 to 772,819 _04060 OLJFJH_04065: OLJFJH_04065 - tryptophan--tRNA ligase, at 772,872 to 773,876 _04065 Position (kb) 771 772Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 770.697 kb on + strand, within OLJFJH_04045at 770.697 kb on + strand, within OLJFJH_04045at 770.697 kb on + strand, within OLJFJH_04045at 770.697 kb on + strand, within OLJFJH_04045at 770.697 kb on + strand, within OLJFJH_04045at 770.697 kb on + strand, within OLJFJH_04045at 770.697 kb on + strand, within OLJFJH_04045at 770.698 kb on - strand, within OLJFJH_04045at 770.698 kb on - strand, within OLJFJH_04045at 770.698 kb on - strand, within OLJFJH_04045at 770.698 kb on - strand, within OLJFJH_04045at 770.699 kb on + strand, within OLJFJH_04045at 770.699 kb on + strand, within OLJFJH_04045at 770.700 kb on - strand, within OLJFJH_04045at 770.700 kb on - strand, within OLJFJH_04045at 770.700 kb on - strand, within OLJFJH_04045at 770.793 kb on + strand, within OLJFJH_04045at 770.794 kb on - strand, within OLJFJH_04045at 770.837 kb on + strand, within OLJFJH_04045at 770.838 kb on - strand, within OLJFJH_04045at 770.872 kb on - strand, within OLJFJH_04045at 770.879 kb on + strand, within OLJFJH_04045at 770.879 kb on + strand, within OLJFJH_04045at 770.880 kb on - strand, within OLJFJH_04045at 770.880 kb on - strand, within OLJFJH_04045at 770.880 kb on - strand, within OLJFJH_04045at 770.882 kb on + strand, within OLJFJH_04045at 770.882 kb on + strand, within OLJFJH_04045at 770.883 kb on - strand, within OLJFJH_04045at 770.886 kb on - strand, within OLJFJH_04045at 771.107 kb on + strandat 771.107 kb on + strandat 771.107 kb on + strandat 771.108 kb on - strandat 771.108 kb on - strandat 771.141 kb on + strandat 771.141 kb on + strandat 771.187 kb on - strandat 771.438 kb on + strandat 771.446 kb on + strandat 771.569 kb on + strandat 771.640 kb on - strand, within OLJFJH_04050at 771.652 kb on + strand, within OLJFJH_04050at 771.657 kb on - strand, within OLJFJH_04050at 771.807 kb on + strand, within OLJFJH_04050at 771.829 kb on + strand, within OLJFJH_04050at 771.829 kb on + strand, within OLJFJH_04050at 771.829 kb on + strand, within OLJFJH_04050at 771.833 kb on + strand, within OLJFJH_04050at 771.839 kb on + strand, within OLJFJH_04050at 771.960 kb on - strandat 771.960 kb on - strandat 772.108 kb on + strand, within OLJFJH_04055at 772.108 kb on + strand, within OLJFJH_04055at 772.109 kb on - strand, within OLJFJH_04055at 772.144 kb on + strand, within OLJFJH_04055at 772.145 kb on - strand, within OLJFJH_04055at 772.165 kb on + strand, within OLJFJH_04055at 772.231 kb on + strand, within OLJFJH_04055at 772.256 kb on + strand, within OLJFJH_04055at 772.256 kb on + strand, within OLJFJH_04055at 772.262 kb on - strand, within OLJFJH_04055at 772.263 kb on + strand, within OLJFJH_04055at 772.263 kb on + strand, within OLJFJH_04055at 772.264 kb on - strand, within OLJFJH_04055at 772.264 kb on - strand, within OLJFJH_04055at 772.267 kb on + strand, within OLJFJH_04055at 772.267 kb on + strand, within OLJFJH_04055at 772.324 kb on + strandat 772.324 kb on + strandat 772.324 kb on + strandat 772.325 kb on - strandat 772.325 kb on - strandat 772.325 kb on - strandat 772.395 kb on + strandat 772.445 kb on + strand, within OLJFJH_04060at 772.445 kb on + strand, within OLJFJH_04060at 772.446 kb on - strand, within OLJFJH_04060at 772.448 kb on - strand, within OLJFJH_04060at 772.532 kb on + strand, within OLJFJH_04060at 772.532 kb on + strand, within OLJFJH_04060at 772.533 kb on - strand, within OLJFJH_04060at 772.533 kb on - strand, within OLJFJH_04060at 772.533 kb on - strand, within OLJFJH_04060at 772.564 kb on + strand, within OLJFJH_04060at 772.564 kb on + strand, within OLJFJH_04060at 772.564 kb on + strand, within OLJFJH_04060at 772.565 kb on - strand, within OLJFJH_04060at 772.565 kb on - strand, within OLJFJH_04060at 772.569 kb on + strand, within OLJFJH_04060at 772.569 kb on + strand, within OLJFJH_04060at 772.569 kb on + strand, within OLJFJH_04060at 772.570 kb on - strand, within OLJFJH_04060at 772.570 kb on - strand, within OLJFJH_04060at 772.570 kb on - strand, within OLJFJH_04060at 772.570 kb on - strand, within OLJFJH_04060at 772.570 kb on - strand, within OLJFJH_04060at 772.572 kb on + strand, within OLJFJH_04060at 772.580 kb on - strand, within OLJFJH_04060at 772.696 kb on + strand, within OLJFJH_04060at 772.772 kb on + strand, within OLJFJH_04060at 772.773 kb on - strand, within OLJFJH_04060at 772.778 kb on + strandat 772.778 kb on + strandat 772.798 kb on - strandat 772.818 kb on - strandat 772.818 kb on - strandat 772.818 kb on - strandat 772.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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770,697 + OLJFJH_04045 0.64 +3.2
770,697 + OLJFJH_04045 0.64 +0.6
770,697 + OLJFJH_04045 0.64 -0.0
770,697 + OLJFJH_04045 0.64 -0.6
770,697 + OLJFJH_04045 0.64 +0.3
770,697 + OLJFJH_04045 0.64 -1.0
770,697 + OLJFJH_04045 0.64 +0.2
770,698 - OLJFJH_04045 0.64 -0.2
770,698 - OLJFJH_04045 0.64 -0.5
770,698 - OLJFJH_04045 0.64 -0.5
770,698 - OLJFJH_04045 0.64 -0.3
770,699 + OLJFJH_04045 0.64 -1.3
770,699 + OLJFJH_04045 0.64 -1.2
770,700 - OLJFJH_04045 0.64 -0.7
770,700 - OLJFJH_04045 0.64 -2.0
770,700 - OLJFJH_04045 0.64 -1.3
770,793 + OLJFJH_04045 0.72 +0.4
770,794 - OLJFJH_04045 0.72 +0.4
770,837 + OLJFJH_04045 0.76 +0.2
770,838 - OLJFJH_04045 0.76 -0.3
770,872 - OLJFJH_04045 0.79 +0.2
770,879 + OLJFJH_04045 0.79 -0.4
770,879 + OLJFJH_04045 0.79 -1.1
770,880 - OLJFJH_04045 0.79 +0.4
770,880 - OLJFJH_04045 0.79 -1.2
770,880 - OLJFJH_04045 0.79 -1.3
770,882 + OLJFJH_04045 0.80 -1.1
770,882 + OLJFJH_04045 0.80 -0.1
770,883 - OLJFJH_04045 0.80 +6.3
770,886 - OLJFJH_04045 0.80 -0.3
771,107 + -1.8
771,107 + -0.4
771,107 + +0.2
771,108 - -1.0
771,108 - +0.5
771,141 + -0.4
771,141 + +0.2
771,187 - -0.9
771,438 + +0.3
771,446 + -0.1
771,569 + +0.0
771,640 - OLJFJH_04050 0.14 +6.9
771,652 + OLJFJH_04050 0.17 -0.0
771,657 - OLJFJH_04050 0.19 +0.0
771,807 + OLJFJH_04050 0.63 +3.5
771,829 + OLJFJH_04050 0.70 -0.2
771,829 + OLJFJH_04050 0.70 +1.8
771,829 + OLJFJH_04050 0.70 -0.4
771,833 + OLJFJH_04050 0.71 +0.7
771,839 + OLJFJH_04050 0.73 +0.2
771,960 - -1.1
771,960 - +1.3
772,108 + OLJFJH_04055 0.30 -0.9
772,108 + OLJFJH_04055 0.30 -0.0
772,109 - OLJFJH_04055 0.30 -1.7
772,144 + OLJFJH_04055 0.42 +0.1
772,145 - OLJFJH_04055 0.42 -0.8
772,165 + OLJFJH_04055 0.49 +0.9
772,231 + OLJFJH_04055 0.70 +2.3
772,256 + OLJFJH_04055 0.78 -0.7
772,256 + OLJFJH_04055 0.78 -0.2
772,262 - OLJFJH_04055 0.80 -2.2
772,263 + OLJFJH_04055 0.81 +1.1
772,263 + OLJFJH_04055 0.81 -0.7
772,264 - OLJFJH_04055 0.81 -0.9
772,264 - OLJFJH_04055 0.81 +0.1
772,267 + OLJFJH_04055 0.82 +0.1
772,267 + OLJFJH_04055 0.82 +0.8
772,324 + -1.4
772,324 + +0.0
772,324 + -0.1
772,325 - -0.1
772,325 - +1.8
772,325 - -0.9
772,395 + -0.0
772,445 + OLJFJH_04060 0.14 +0.9
772,445 + OLJFJH_04060 0.14 -0.3
772,446 - OLJFJH_04060 0.15 -1.5
772,448 - OLJFJH_04060 0.15 +1.0
772,532 + OLJFJH_04060 0.34 +0.2
772,532 + OLJFJH_04060 0.34 -0.6
772,533 - OLJFJH_04060 0.34 -0.7
772,533 - OLJFJH_04060 0.34 -0.4
772,533 - OLJFJH_04060 0.34 -0.9
772,564 + OLJFJH_04060 0.42 -0.5
772,564 + OLJFJH_04060 0.42 +0.7
772,564 + OLJFJH_04060 0.42 -0.1
772,565 - OLJFJH_04060 0.42 -1.8
772,565 - OLJFJH_04060 0.42 -0.4
772,569 + OLJFJH_04060 0.43 -0.3
772,569 + OLJFJH_04060 0.43 +0.6
772,569 + OLJFJH_04060 0.43 +0.4
772,570 - OLJFJH_04060 0.43 -0.5
772,570 - OLJFJH_04060 0.43 -0.7
772,570 - OLJFJH_04060 0.43 +0.0
772,570 - OLJFJH_04060 0.43 +0.0
772,570 - OLJFJH_04060 0.43 -1.5
772,572 + OLJFJH_04060 0.43 +0.3
772,580 - OLJFJH_04060 0.45 +0.7
772,696 + OLJFJH_04060 0.72 -0.8
772,772 + OLJFJH_04060 0.89 -0.9
772,773 - OLJFJH_04060 0.89 +0.3
772,778 + -0.3
772,778 + -0.2
772,798 - -1.0
772,818 - +1.7
772,818 - -1.4
772,818 - -0.7
772,827 + +0.8

Or see this region's nucleotide sequence