Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03385 and OLJFJH_03390 are separated by 102 nucleotides OLJFJH_03390 and OLJFJH_03395 are separated by 440 nucleotides OLJFJH_03395 and OLJFJH_03400 are separated by 497 nucleotides
OLJFJH_03385: OLJFJH_03385 - redox-sensitive transcriptional activator SoxR, at 648,149 to 648,616
_03385
OLJFJH_03390: OLJFJH_03390 - superoxide response transcriptional regulator SoxS, at 648,719 to 649,144
_03390
OLJFJH_03395: OLJFJH_03395 - hypothetical protein, at 649,585 to 649,740
_03395
OLJFJH_03400: OLJFJH_03400 - Insertion element IS2A uncharacterized protein, at 650,238 to 650,630
_03400
Position (kb) 649
650 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 648.627 kb on - strand at 648.636 kb on - strand at 648.650 kb on - strand at 648.651 kb on + strand at 648.651 kb on + strand at 648.652 kb on - strand at 648.718 kb on + strand at 648.718 kb on + strand at 648.719 kb on - strand at 648.719 kb on - strand at 648.763 kb on + strand, within OLJFJH_03390 at 648.828 kb on + strand, within OLJFJH_03390 at 648.828 kb on + strand, within OLJFJH_03390 at 648.829 kb on - strand, within OLJFJH_03390 at 648.872 kb on + strand, within OLJFJH_03390 at 648.873 kb on - strand, within OLJFJH_03390 at 648.875 kb on - strand, within OLJFJH_03390 at 648.892 kb on - strand, within OLJFJH_03390 at 648.953 kb on + strand, within OLJFJH_03390 at 648.953 kb on + strand, within OLJFJH_03390 at 648.954 kb on - strand, within OLJFJH_03390 at 649.027 kb on + strand, within OLJFJH_03390 at 649.028 kb on - strand, within OLJFJH_03390 at 649.030 kb on + strand, within OLJFJH_03390 at 649.050 kb on + strand, within OLJFJH_03390 at 649.142 kb on + strand at 649.142 kb on + strand at 649.143 kb on - strand at 649.143 kb on - strand at 649.143 kb on - strand at 649.338 kb on + strand at 649.413 kb on - strand at 649.435 kb on + strand at 649.435 kb on + strand at 649.436 kb on - strand at 649.436 kb on - strand at 649.436 kb on - strand at 649.583 kb on + strand at 649.584 kb on - strand at 649.584 kb on - strand at 649.622 kb on - strand, within OLJFJH_03395 at 649.656 kb on + strand, within OLJFJH_03395 at 649.704 kb on + strand, within OLJFJH_03395 at 649.704 kb on + strand, within OLJFJH_03395 at 649.705 kb on - strand, within OLJFJH_03395 at 649.954 kb on + strand at 649.993 kb on + strand at 650.108 kb on + strand at 650.121 kb on + strand at 650.126 kb on + strand at 650.308 kb on + strand, within OLJFJH_03400 at 650.370 kb on + strand, within OLJFJH_03400 at 650.371 kb on - strand, within OLJFJH_03400 at 650.371 kb on - strand, within OLJFJH_03400 at 650.432 kb on + strand, within OLJFJH_03400 at 650.446 kb on + strand, within OLJFJH_03400 at 650.454 kb on - strand, within OLJFJH_03400 at 650.454 kb on - strand, within OLJFJH_03400 at 650.547 kb on + strand, within OLJFJH_03400 at 650.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 648,627 - -0.2 648,636 - -0.6 648,650 - -0.6 648,651 + -1.1 648,651 + +0.2 648,652 - +0.9 648,718 + +0.6 648,718 + +2.1 648,719 - -0.3 648,719 - -0.3 648,763 + OLJFJH_03390 0.10 -0.8 648,828 + OLJFJH_03390 0.26 -0.3 648,828 + OLJFJH_03390 0.26 -0.5 648,829 - OLJFJH_03390 0.26 +0.5 648,872 + OLJFJH_03390 0.36 -0.6 648,873 - OLJFJH_03390 0.36 +0.9 648,875 - OLJFJH_03390 0.37 +0.6 648,892 - OLJFJH_03390 0.41 -2.6 648,953 + OLJFJH_03390 0.55 -1.0 648,953 + OLJFJH_03390 0.55 -0.2 648,954 - OLJFJH_03390 0.55 -0.8 649,027 + OLJFJH_03390 0.72 -0.6 649,028 - OLJFJH_03390 0.73 +0.1 649,030 + OLJFJH_03390 0.73 +0.7 649,050 + OLJFJH_03390 0.78 -1.0 649,142 + -0.9 649,142 + +0.6 649,143 - +2.1 649,143 - -0.6 649,143 - -0.1 649,338 + -0.4 649,413 - +1.0 649,435 + -0.6 649,435 + +0.4 649,436 - -0.4 649,436 - +1.5 649,436 - +0.0 649,583 + +2.2 649,584 - -1.1 649,584 - +0.2 649,622 - OLJFJH_03395 0.24 +0.2 649,656 + OLJFJH_03395 0.46 -0.0 649,704 + OLJFJH_03395 0.76 +4.9 649,704 + OLJFJH_03395 0.76 -0.5 649,705 - OLJFJH_03395 0.77 -0.1 649,954 + -1.4 649,993 + -0.2 650,108 + +1.0 650,121 + +0.3 650,126 + +2.4 650,308 + OLJFJH_03400 0.18 -0.3 650,370 + OLJFJH_03400 0.34 -2.0 650,371 - OLJFJH_03400 0.34 +1.5 650,371 - OLJFJH_03400 0.34 -0.0 650,432 + OLJFJH_03400 0.49 -1.1 650,446 + OLJFJH_03400 0.53 +0.5 650,454 - OLJFJH_03400 0.55 +1.3 650,454 - OLJFJH_03400 0.55 +1.6 650,547 + OLJFJH_03400 0.79 -1.1 650,655 + -0.0
Or see this region's nucleotide sequence