Strain Fitness in Erwinia amylovora T8 around OLJFJH_03375

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03370 and OLJFJH_03375 are separated by 165 nucleotidesOLJFJH_03375 and OLJFJH_03380 are separated by 283 nucleotidesOLJFJH_03380 and OLJFJH_03385 are separated by 43 nucleotides OLJFJH_03370: OLJFJH_03370 - Na+/H+ antiporter, at 643,812 to 645,461 _03370 OLJFJH_03375: OLJFJH_03375 - permease, at 645,627 to 647,159 _03375 OLJFJH_03380: OLJFJH_03380 - glutathione S-transferase, at 647,443 to 648,105 _03380 OLJFJH_03385: OLJFJH_03385 - redox-sensitive transcriptional activator SoxR, at 648,149 to 648,616 _03385 Position (kb) 645 646 647 648Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 644.684 kb on + strand, within OLJFJH_03370at 644.747 kb on + strand, within OLJFJH_03370at 644.747 kb on + strand, within OLJFJH_03370at 644.748 kb on - strand, within OLJFJH_03370at 644.765 kb on - strand, within OLJFJH_03370at 644.765 kb on - strand, within OLJFJH_03370at 644.765 kb on - strand, within OLJFJH_03370at 644.850 kb on - strand, within OLJFJH_03370at 645.030 kb on - strand, within OLJFJH_03370at 645.148 kb on + strand, within OLJFJH_03370at 645.278 kb on + strand, within OLJFJH_03370at 645.288 kb on + strand, within OLJFJH_03370at 645.475 kb on - strandat 645.475 kb on - strandat 645.476 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.509 kb on + strandat 645.510 kb on - strandat 645.510 kb on - strandat 645.510 kb on - strandat 645.510 kb on - strandat 645.511 kb on + strandat 645.512 kb on - strandat 645.628 kb on + strandat 645.628 kb on + strandat 645.699 kb on - strandat 645.785 kb on + strand, within OLJFJH_03375at 645.790 kb on - strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.874 kb on + strand, within OLJFJH_03375at 645.875 kb on - strand, within OLJFJH_03375at 645.875 kb on - strand, within OLJFJH_03375at 646.018 kb on + strand, within OLJFJH_03375at 646.019 kb on - strand, within OLJFJH_03375at 646.019 kb on - strand, within OLJFJH_03375at 646.019 kb on - strand, within OLJFJH_03375at 646.019 kb on - strand, within OLJFJH_03375at 646.019 kb on - strand, within OLJFJH_03375at 646.019 kb on - strand, within OLJFJH_03375at 646.101 kb on - strand, within OLJFJH_03375at 646.170 kb on + strand, within OLJFJH_03375at 646.232 kb on + strand, within OLJFJH_03375at 646.233 kb on - strand, within OLJFJH_03375at 646.242 kb on - strand, within OLJFJH_03375at 646.245 kb on + strand, within OLJFJH_03375at 646.245 kb on + strand, within OLJFJH_03375at 646.357 kb on - strand, within OLJFJH_03375at 646.483 kb on - strand, within OLJFJH_03375at 646.511 kb on + strand, within OLJFJH_03375at 646.832 kb on + strand, within OLJFJH_03375at 646.832 kb on + strand, within OLJFJH_03375at 646.832 kb on + strand, within OLJFJH_03375at 646.832 kb on + strand, within OLJFJH_03375at 646.832 kb on + strand, within OLJFJH_03375at 646.833 kb on - strand, within OLJFJH_03375at 646.833 kb on - strand, within OLJFJH_03375at 646.833 kb on - strand, within OLJFJH_03375at 646.833 kb on - strand, within OLJFJH_03375at 646.833 kb on - strand, within OLJFJH_03375at 646.855 kb on + strand, within OLJFJH_03375at 646.855 kb on + strand, within OLJFJH_03375at 646.855 kb on + strand, within OLJFJH_03375at 646.856 kb on - strand, within OLJFJH_03375at 646.856 kb on - strand, within OLJFJH_03375at 646.942 kb on - strand, within OLJFJH_03375at 646.970 kb on + strand, within OLJFJH_03375at 646.970 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.976 kb on + strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.977 kb on - strand, within OLJFJH_03375at 646.979 kb on + strand, within OLJFJH_03375at 646.980 kb on - strand, within OLJFJH_03375at 646.980 kb on - strand, within OLJFJH_03375at 646.999 kb on - strand, within OLJFJH_03375at 647.063 kb on + strandat 647.079 kb on + strandat 647.080 kb on - strandat 647.080 kb on - strandat 647.080 kb on - strandat 647.080 kb on - strandat 647.131 kb on + strandat 647.131 kb on + strandat 647.132 kb on - strandat 647.143 kb on + strandat 647.144 kb on - strandat 647.236 kb on + strandat 647.266 kb on + strandat 647.267 kb on - strandat 647.334 kb on - strandat 647.334 kb on - strandat 647.343 kb on + strandat 647.343 kb on + strandat 647.344 kb on - strandat 647.344 kb on - strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.683 kb on - strand, within OLJFJH_03380at 647.684 kb on + strand, within OLJFJH_03380at 647.684 kb on + strand, within OLJFJH_03380at 647.684 kb on + strand, within OLJFJH_03380at 647.685 kb on - strand, within OLJFJH_03380at 647.685 kb on - strand, within OLJFJH_03380at 647.685 kb on - strand, within OLJFJH_03380at 647.811 kb on - strand, within OLJFJH_03380at 647.811 kb on - strand, within OLJFJH_03380at 647.833 kb on + strand, within OLJFJH_03380at 647.834 kb on - strand, within OLJFJH_03380at 647.834 kb on - strand, within OLJFJH_03380at 647.880 kb on - strand, within OLJFJH_03380at 647.880 kb on - strand, within OLJFJH_03380at 648.015 kb on - strand, within OLJFJH_03380at 648.015 kb on - strand, within OLJFJH_03380at 648.021 kb on + strand, within OLJFJH_03380at 648.021 kb on + strand, within OLJFJH_03380at 648.116 kb on + strandat 648.141 kb on - strandat 648.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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644,684 + OLJFJH_03370 0.53 -2.9
644,747 + OLJFJH_03370 0.57 +1.0
644,747 + OLJFJH_03370 0.57 +0.8
644,748 - OLJFJH_03370 0.57 -1.3
644,765 - OLJFJH_03370 0.58 +0.2
644,765 - OLJFJH_03370 0.58 -0.3
644,765 - OLJFJH_03370 0.58 +1.2
644,850 - OLJFJH_03370 0.63 -0.2
645,030 - OLJFJH_03370 0.74 -1.0
645,148 + OLJFJH_03370 0.81 +1.4
645,278 + OLJFJH_03370 0.89 +0.7
645,288 + OLJFJH_03370 0.89 -0.1
645,475 - +0.0
645,475 - -0.6
645,476 + -1.0
645,509 + -0.1
645,509 + +1.5
645,509 + +2.5
645,509 + -0.9
645,509 + -0.8
645,509 + -0.2
645,509 + -0.3
645,509 + -1.2
645,509 + +0.3
645,509 + +1.2
645,509 + -0.5
645,510 - -0.0
645,510 - -0.4
645,510 - -0.3
645,510 - -0.2
645,511 + -0.0
645,512 - +0.1
645,628 + +0.1
645,628 + -0.3
645,699 - -0.5
645,785 + OLJFJH_03375 0.10 +1.4
645,790 - OLJFJH_03375 0.11 +4.1
645,874 + OLJFJH_03375 0.16 +2.3
645,874 + OLJFJH_03375 0.16 -1.1
645,874 + OLJFJH_03375 0.16 +0.7
645,874 + OLJFJH_03375 0.16 -0.2
645,874 + OLJFJH_03375 0.16 +2.1
645,874 + OLJFJH_03375 0.16 +0.9
645,874 + OLJFJH_03375 0.16 +1.6
645,875 - OLJFJH_03375 0.16 -0.5
645,875 - OLJFJH_03375 0.16 +7.1
646,018 + OLJFJH_03375 0.26 -0.3
646,019 - OLJFJH_03375 0.26 +0.1
646,019 - OLJFJH_03375 0.26 +3.4
646,019 - OLJFJH_03375 0.26 +2.8
646,019 - OLJFJH_03375 0.26 +0.1
646,019 - OLJFJH_03375 0.26 +1.8
646,019 - OLJFJH_03375 0.26 +0.5
646,101 - OLJFJH_03375 0.31 +0.9
646,170 + OLJFJH_03375 0.35 +1.3
646,232 + OLJFJH_03375 0.39 +0.7
646,233 - OLJFJH_03375 0.40 +1.1
646,242 - OLJFJH_03375 0.40 +3.4
646,245 + OLJFJH_03375 0.40 +1.8
646,245 + OLJFJH_03375 0.40 +0.4
646,357 - OLJFJH_03375 0.48 +0.5
646,483 - OLJFJH_03375 0.56 +0.5
646,511 + OLJFJH_03375 0.58 +0.3
646,832 + OLJFJH_03375 0.79 +0.4
646,832 + OLJFJH_03375 0.79 -0.1
646,832 + OLJFJH_03375 0.79 +1.5
646,832 + OLJFJH_03375 0.79 +0.5
646,832 + OLJFJH_03375 0.79 +0.1
646,833 - OLJFJH_03375 0.79 -0.0
646,833 - OLJFJH_03375 0.79 +0.7
646,833 - OLJFJH_03375 0.79 +4.5
646,833 - OLJFJH_03375 0.79 +0.0
646,833 - OLJFJH_03375 0.79 +0.3
646,855 + OLJFJH_03375 0.80 -1.6
646,855 + OLJFJH_03375 0.80 +0.6
646,855 + OLJFJH_03375 0.80 +1.6
646,856 - OLJFJH_03375 0.80 +6.3
646,856 - OLJFJH_03375 0.80 +1.3
646,942 - OLJFJH_03375 0.86 +2.2
646,970 + OLJFJH_03375 0.88 -0.3
646,970 + OLJFJH_03375 0.88 +1.1
646,976 + OLJFJH_03375 0.88 +0.7
646,976 + OLJFJH_03375 0.88 +0.8
646,976 + OLJFJH_03375 0.88 +3.6
646,976 + OLJFJH_03375 0.88 -0.3
646,976 + OLJFJH_03375 0.88 -1.2
646,976 + OLJFJH_03375 0.88 +0.2
646,976 + OLJFJH_03375 0.88 +2.4
646,976 + OLJFJH_03375 0.88 +0.8
646,977 - OLJFJH_03375 0.88 -0.0
646,977 - OLJFJH_03375 0.88 +0.3
646,977 - OLJFJH_03375 0.88 +0.9
646,977 - OLJFJH_03375 0.88 +0.4
646,977 - OLJFJH_03375 0.88 -0.4
646,977 - OLJFJH_03375 0.88 -0.2
646,977 - OLJFJH_03375 0.88 -1.1
646,977 - OLJFJH_03375 0.88 +1.1
646,977 - OLJFJH_03375 0.88 +0.6
646,977 - OLJFJH_03375 0.88 +1.2
646,977 - OLJFJH_03375 0.88 +2.3
646,977 - OLJFJH_03375 0.88 +0.4
646,977 - OLJFJH_03375 0.88 +0.5
646,979 + OLJFJH_03375 0.88 +1.1
646,980 - OLJFJH_03375 0.88 -1.1
646,980 - OLJFJH_03375 0.88 -0.4
646,999 - OLJFJH_03375 0.89 -0.6
647,063 + +0.9
647,079 + -0.2
647,080 - -0.3
647,080 - +0.0
647,080 - -1.2
647,080 - -0.3
647,131 + +0.1
647,131 + -1.6
647,132 - -1.3
647,143 + +1.0
647,144 - -0.0
647,236 + +1.9
647,266 + +1.2
647,267 - -1.3
647,334 - -0.1
647,334 - -0.0
647,343 + -0.5
647,343 + -0.9
647,344 - +1.9
647,344 - -0.7
647,345 + +0.7
647,345 + +3.6
647,345 + -0.6
647,345 + -1.3
647,345 + -0.2
647,345 + -0.2
647,346 - +2.0
647,346 - +0.9
647,346 - +0.6
647,346 - -0.2
647,346 - +3.8
647,683 - OLJFJH_03380 0.36 +0.9
647,684 + OLJFJH_03380 0.36 -0.4
647,684 + OLJFJH_03380 0.36 -1.5
647,684 + OLJFJH_03380 0.36 -0.5
647,685 - OLJFJH_03380 0.37 -0.1
647,685 - OLJFJH_03380 0.37 -2.2
647,685 - OLJFJH_03380 0.37 +0.5
647,811 - OLJFJH_03380 0.56 -0.7
647,811 - OLJFJH_03380 0.56 -1.5
647,833 + OLJFJH_03380 0.59 -0.2
647,834 - OLJFJH_03380 0.59 +3.8
647,834 - OLJFJH_03380 0.59 -0.4
647,880 - OLJFJH_03380 0.66 +0.0
647,880 - OLJFJH_03380 0.66 -0.1
648,015 - OLJFJH_03380 0.86 -0.9
648,015 - OLJFJH_03380 0.86 -2.1
648,021 + OLJFJH_03380 0.87 -0.3
648,021 + OLJFJH_03380 0.87 -1.0
648,116 + -0.4
648,141 - -1.1
648,143 - -0.8

Or see this region's nucleotide sequence