Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01955 and OLJFJH_01960 are separated by 218 nucleotides OLJFJH_01960 and OLJFJH_01965 are separated by 76 nucleotides
OLJFJH_01955: OLJFJH_01955 - Putative metabolite transport protein, at 345,528 to 345,971
_01955
OLJFJH_01960: OLJFJH_01960 - DUF2946 domain-containing protein, at 346,190 to 346,636
_01960
OLJFJH_01965: OLJFJH_01965 - PepSY-associated TM region, at 346,713 to 348,113
_01965
Position (kb) 346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.191 kb on - strand at 345.191 kb on - strand at 345.497 kb on + strand at 345.498 kb on - strand at 345.531 kb on + strand at 345.532 kb on - strand at 345.808 kb on + strand, within OLJFJH_01955 at 345.815 kb on - strand, within OLJFJH_01955 at 345.815 kb on - strand, within OLJFJH_01955 at 345.815 kb on - strand, within OLJFJH_01955 at 345.886 kb on - strand, within OLJFJH_01955 at 346.087 kb on + strand at 346.088 kb on - strand at 346.107 kb on + strand at 346.123 kb on + strand at 346.133 kb on + strand at 346.134 kb on - strand at 346.171 kb on - strand at 346.367 kb on - strand, within OLJFJH_01960 at 346.515 kb on + strand, within OLJFJH_01960 at 346.515 kb on + strand, within OLJFJH_01960 at 346.515 kb on + strand, within OLJFJH_01960 at 346.646 kb on + strand at 346.646 kb on + strand at 346.647 kb on - strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.682 kb on - strand at 346.712 kb on + strand at 346.713 kb on - strand at 346.713 kb on - strand at 346.713 kb on - strand at 346.854 kb on + strand, within OLJFJH_01965 at 346.854 kb on + strand, within OLJFJH_01965 at 346.855 kb on - strand, within OLJFJH_01965 at 346.855 kb on - strand, within OLJFJH_01965 at 347.137 kb on + strand, within OLJFJH_01965 at 347.137 kb on + strand, within OLJFJH_01965 at 347.137 kb on + strand, within OLJFJH_01965 at 347.138 kb on - strand, within OLJFJH_01965 at 347.138 kb on - strand, within OLJFJH_01965 at 347.138 kb on - strand, within OLJFJH_01965 at 347.140 kb on + strand, within OLJFJH_01965 at 347.205 kb on + strand, within OLJFJH_01965 at 347.206 kb on - strand, within OLJFJH_01965 at 347.206 kb on - strand, within OLJFJH_01965 at 347.206 kb on - strand, within OLJFJH_01965 at 347.430 kb on - strand, within OLJFJH_01965 at 347.554 kb on + strand, within OLJFJH_01965 at 347.555 kb on - strand, within OLJFJH_01965
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 345,191 - -1.1 345,191 - -1.1 345,497 + +0.2 345,498 - -0.3 345,531 + -0.5 345,532 - -0.3 345,808 + OLJFJH_01955 0.63 -0.1 345,815 - OLJFJH_01955 0.65 +0.1 345,815 - OLJFJH_01955 0.65 -0.1 345,815 - OLJFJH_01955 0.65 -0.1 345,886 - OLJFJH_01955 0.81 +0.5 346,087 + -1.9 346,088 - +0.0 346,107 + -0.1 346,123 + +2.3 346,133 + -0.1 346,134 - +0.2 346,171 - -0.2 346,367 - OLJFJH_01960 0.40 +0.1 346,515 + OLJFJH_01960 0.73 +2.2 346,515 + OLJFJH_01960 0.73 +0.3 346,515 + OLJFJH_01960 0.73 -0.7 346,646 + -0.2 346,646 + -0.1 346,647 - +0.3 346,681 + +0.3 346,681 + +1.4 346,682 - -0.1 346,712 + -0.2 346,713 - -1.8 346,713 - -0.9 346,713 - +0.3 346,854 + OLJFJH_01965 0.10 -0.7 346,854 + OLJFJH_01965 0.10 -0.6 346,855 - OLJFJH_01965 0.10 -1.3 346,855 - OLJFJH_01965 0.10 +0.3 347,137 + OLJFJH_01965 0.30 +1.4 347,137 + OLJFJH_01965 0.30 +1.1 347,137 + OLJFJH_01965 0.30 -0.3 347,138 - OLJFJH_01965 0.30 -0.5 347,138 - OLJFJH_01965 0.30 -0.3 347,138 - OLJFJH_01965 0.30 -1.7 347,140 + OLJFJH_01965 0.30 -0.6 347,205 + OLJFJH_01965 0.35 -0.5 347,206 - OLJFJH_01965 0.35 -1.1 347,206 - OLJFJH_01965 0.35 +2.5 347,206 - OLJFJH_01965 0.35 +0.3 347,430 - OLJFJH_01965 0.51 -1.0 347,554 + OLJFJH_01965 0.60 -1.1 347,555 - OLJFJH_01965 0.60 -0.5
Or see this region's nucleotide sequence