Strain Fitness in Erwinia amylovora T8 around OLJFJH_01830

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01820 and OLJFJH_01825 are separated by 18 nucleotidesOLJFJH_01825 and OLJFJH_01830 overlap by 4 nucleotidesOLJFJH_01830 and OLJFJH_01835 are separated by 118 nucleotidesOLJFJH_01835 and OLJFJH_01840 are separated by 125 nucleotides OLJFJH_01820: OLJFJH_01820 - hypothetical protein, at 321,602 to 322,609 _01820 OLJFJH_01825: OLJFJH_01825 - serine/threonine phosphatase, at 322,628 to 323,422 _01825 OLJFJH_01830: OLJFJH_01830 - FHA domain-containing protein, at 323,419 to 325,260 _01830 OLJFJH_01835: OLJFJH_01835 - T6SS amidase immunity protein Tai4 family protein, at 325,379 to 325,747 _01835 OLJFJH_01840: OLJFJH_01840 - type VI secretion protein, at 325,873 to 326,280 _01840 Position (kb) 323 324 325 326Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 322.487 kb on - strand, within OLJFJH_01820at 322.520 kb on - strandat 322.520 kb on - strandat 322.602 kb on + strandat 322.602 kb on + strandat 322.603 kb on - strandat 322.609 kb on + strandat 322.610 kb on - strandat 322.610 kb on - strandat 322.610 kb on - strandat 322.626 kb on + strandat 322.627 kb on - strandat 322.630 kb on - strandat 322.645 kb on + strandat 322.722 kb on + strand, within OLJFJH_01825at 322.722 kb on + strand, within OLJFJH_01825at 322.722 kb on + strand, within OLJFJH_01825at 322.722 kb on + strand, within OLJFJH_01825at 322.722 kb on + strand, within OLJFJH_01825at 322.722 kb on + strand, within OLJFJH_01825at 322.801 kb on + strand, within OLJFJH_01825at 322.810 kb on + strand, within OLJFJH_01825at 322.811 kb on - strand, within OLJFJH_01825at 322.811 kb on - strand, within OLJFJH_01825at 322.811 kb on - strand, within OLJFJH_01825at 322.828 kb on + strand, within OLJFJH_01825at 322.828 kb on + strand, within OLJFJH_01825at 322.829 kb on - strand, within OLJFJH_01825at 322.893 kb on - strand, within OLJFJH_01825at 322.912 kb on - strand, within OLJFJH_01825at 322.912 kb on - strand, within OLJFJH_01825at 323.037 kb on + strand, within OLJFJH_01825at 323.038 kb on - strand, within OLJFJH_01825at 323.044 kb on - strand, within OLJFJH_01825at 323.044 kb on - strand, within OLJFJH_01825at 323.061 kb on + strand, within OLJFJH_01825at 323.062 kb on - strand, within OLJFJH_01825at 323.143 kb on + strand, within OLJFJH_01825at 323.205 kb on + strand, within OLJFJH_01825at 323.374 kb on + strandat 323.413 kb on + strandat 323.416 kb on + strandat 323.453 kb on + strandat 323.474 kb on + strandat 323.475 kb on - strandat 323.475 kb on - strandat 323.544 kb on - strandat 323.664 kb on + strand, within OLJFJH_01830at 323.665 kb on - strand, within OLJFJH_01830at 323.665 kb on - strand, within OLJFJH_01830at 323.665 kb on - strand, within OLJFJH_01830at 323.665 kb on - strand, within OLJFJH_01830at 323.794 kb on + strand, within OLJFJH_01830at 323.866 kb on + strand, within OLJFJH_01830at 323.867 kb on - strand, within OLJFJH_01830at 323.867 kb on - strand, within OLJFJH_01830at 323.925 kb on + strand, within OLJFJH_01830at 323.925 kb on + strand, within OLJFJH_01830at 323.925 kb on + strand, within OLJFJH_01830at 323.925 kb on + strand, within OLJFJH_01830at 323.926 kb on - strand, within OLJFJH_01830at 323.926 kb on - strand, within OLJFJH_01830at 323.926 kb on - strand, within OLJFJH_01830at 323.977 kb on - strand, within OLJFJH_01830at 324.124 kb on - strand, within OLJFJH_01830at 324.603 kb on + strand, within OLJFJH_01830at 324.603 kb on + strand, within OLJFJH_01830at 324.604 kb on - strand, within OLJFJH_01830at 324.708 kb on + strand, within OLJFJH_01830at 324.709 kb on - strand, within OLJFJH_01830at 324.709 kb on - strand, within OLJFJH_01830at 324.709 kb on - strand, within OLJFJH_01830at 325.003 kb on + strand, within OLJFJH_01830at 325.003 kb on + strand, within OLJFJH_01830at 325.035 kb on + strand, within OLJFJH_01830at 325.035 kb on + strand, within OLJFJH_01830at 325.102 kb on - strandat 325.110 kb on + strandat 325.111 kb on - strandat 325.162 kb on - strandat 325.245 kb on + strandat 325.245 kb on + strandat 325.245 kb on + strandat 325.246 kb on - strandat 325.246 kb on - strandat 325.314 kb on + strandat 325.381 kb on - strandat 325.381 kb on - strandat 325.438 kb on - strand, within OLJFJH_01835at 325.487 kb on - strand, within OLJFJH_01835at 325.487 kb on - strand, within OLJFJH_01835at 325.487 kb on - strand, within OLJFJH_01835at 325.489 kb on - strand, within OLJFJH_01835at 325.548 kb on + strand, within OLJFJH_01835at 325.567 kb on - strand, within OLJFJH_01835at 325.736 kb on + strandat 325.828 kb on - strandat 326.167 kb on - strand, within OLJFJH_01840

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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322,487 - OLJFJH_01820 0.88 -0.1
322,520 - +0.8
322,520 - +1.7
322,602 + +1.3
322,602 + +2.5
322,603 - +0.8
322,609 + -0.7
322,610 - +0.1
322,610 - -0.6
322,610 - +1.5
322,626 + +2.6
322,627 - +1.1
322,630 - -0.5
322,645 + +1.1
322,722 + OLJFJH_01825 0.12 -0.2
322,722 + OLJFJH_01825 0.12 -0.8
322,722 + OLJFJH_01825 0.12 -0.7
322,722 + OLJFJH_01825 0.12 -0.4
322,722 + OLJFJH_01825 0.12 -1.7
322,722 + OLJFJH_01825 0.12 +0.6
322,801 + OLJFJH_01825 0.22 -0.6
322,810 + OLJFJH_01825 0.23 +1.0
322,811 - OLJFJH_01825 0.23 -1.0
322,811 - OLJFJH_01825 0.23 -1.3
322,811 - OLJFJH_01825 0.23 -0.5
322,828 + OLJFJH_01825 0.25 -0.4
322,828 + OLJFJH_01825 0.25 +0.1
322,829 - OLJFJH_01825 0.25 -1.5
322,893 - OLJFJH_01825 0.33 -0.4
322,912 - OLJFJH_01825 0.36 +1.1
322,912 - OLJFJH_01825 0.36 +1.0
323,037 + OLJFJH_01825 0.51 -0.8
323,038 - OLJFJH_01825 0.52 -2.1
323,044 - OLJFJH_01825 0.52 -0.5
323,044 - OLJFJH_01825 0.52 -1.6
323,061 + OLJFJH_01825 0.54 -1.2
323,062 - OLJFJH_01825 0.55 +1.4
323,143 + OLJFJH_01825 0.65 +0.9
323,205 + OLJFJH_01825 0.73 -0.5
323,374 + -0.7
323,413 + -0.8
323,416 + -0.7
323,453 + +1.7
323,474 + +2.7
323,475 - +1.1
323,475 - +0.1
323,544 - -0.1
323,664 + OLJFJH_01830 0.13 +1.8
323,665 - OLJFJH_01830 0.13 +0.4
323,665 - OLJFJH_01830 0.13 +0.1
323,665 - OLJFJH_01830 0.13 +0.3
323,665 - OLJFJH_01830 0.13 -0.1
323,794 + OLJFJH_01830 0.20 +1.0
323,866 + OLJFJH_01830 0.24 +1.3
323,867 - OLJFJH_01830 0.24 -1.8
323,867 - OLJFJH_01830 0.24 -0.7
323,925 + OLJFJH_01830 0.27 +0.0
323,925 + OLJFJH_01830 0.27 +0.9
323,925 + OLJFJH_01830 0.27 +2.8
323,925 + OLJFJH_01830 0.27 +2.0
323,926 - OLJFJH_01830 0.28 -0.9
323,926 - OLJFJH_01830 0.28 +4.6
323,926 - OLJFJH_01830 0.28 +1.0
323,977 - OLJFJH_01830 0.30 +1.7
324,124 - OLJFJH_01830 0.38 +0.9
324,603 + OLJFJH_01830 0.64 -0.5
324,603 + OLJFJH_01830 0.64 -0.2
324,604 - OLJFJH_01830 0.64 +0.6
324,708 + OLJFJH_01830 0.70 +1.7
324,709 - OLJFJH_01830 0.70 +1.0
324,709 - OLJFJH_01830 0.70 +2.9
324,709 - OLJFJH_01830 0.70 +1.0
325,003 + OLJFJH_01830 0.86 -1.5
325,003 + OLJFJH_01830 0.86 +1.4
325,035 + OLJFJH_01830 0.88 -0.0
325,035 + OLJFJH_01830 0.88 +1.5
325,102 - +1.6
325,110 + +4.0
325,111 - +1.4
325,162 - -1.4
325,245 + +1.2
325,245 + +1.6
325,245 + +0.6
325,246 - +0.5
325,246 - +0.6
325,314 + +0.2
325,381 - -1.0
325,381 - +0.1
325,438 - OLJFJH_01835 0.16 -1.3
325,487 - OLJFJH_01835 0.29 -0.4
325,487 - OLJFJH_01835 0.29 -0.7
325,487 - OLJFJH_01835 0.29 -0.3
325,489 - OLJFJH_01835 0.30 -0.4
325,548 + OLJFJH_01835 0.46 +0.1
325,567 - OLJFJH_01835 0.51 -0.9
325,736 + +1.3
325,828 - -0.9
326,167 - OLJFJH_01840 0.72 +0.0

Or see this region's nucleotide sequence