Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01805 and OLJFJH_01810 are separated by 18 nucleotides OLJFJH_01810 and OLJFJH_01815 overlap by 4 nucleotides OLJFJH_01815 and OLJFJH_01820 are separated by 9 nucleotides
OLJFJH_01805: OLJFJH_01805 - type VI secretion system baseplate subunit TssF, at 318,315 to 320,189
_01805
OLJFJH_01810: OLJFJH_01810 - type VI secretion system baseplate subunit TssE, at 320,208 to 320,774
_01810
OLJFJH_01815: OLJFJH_01815 - protein of avirulence locus ImpE, at 320,771 to 321,592
_01815
OLJFJH_01820: OLJFJH_01820 - hypothetical protein, at 321,602 to 322,609
_01820
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 319.801 kb on + strand, within OLJFJH_01805 at 319.802 kb on - strand, within OLJFJH_01805 at 319.802 kb on - strand, within OLJFJH_01805 at 319.942 kb on + strand, within OLJFJH_01805 at 319.942 kb on + strand, within OLJFJH_01805 at 319.943 kb on - strand, within OLJFJH_01805 at 320.164 kb on + strand at 320.164 kb on + strand at 320.165 kb on - strand at 320.181 kb on - strand at 320.313 kb on + strand, within OLJFJH_01810 at 320.402 kb on + strand, within OLJFJH_01810 at 320.418 kb on + strand, within OLJFJH_01810 at 320.418 kb on + strand, within OLJFJH_01810 at 320.418 kb on + strand, within OLJFJH_01810 at 320.419 kb on - strand, within OLJFJH_01810 at 320.546 kb on + strand, within OLJFJH_01810 at 320.585 kb on + strand, within OLJFJH_01810 at 320.585 kb on + strand, within OLJFJH_01810 at 321.010 kb on + strand, within OLJFJH_01815 at 321.011 kb on - strand, within OLJFJH_01815 at 321.212 kb on + strand, within OLJFJH_01815 at 321.212 kb on + strand, within OLJFJH_01815 at 321.212 kb on + strand, within OLJFJH_01815 at 321.212 kb on + strand, within OLJFJH_01815 at 321.212 kb on + strand, within OLJFJH_01815 at 321.213 kb on - strand, within OLJFJH_01815 at 321.213 kb on - strand, within OLJFJH_01815 at 321.494 kb on + strand, within OLJFJH_01815 at 321.495 kb on - strand, within OLJFJH_01815 at 321.495 kb on - strand, within OLJFJH_01815 at 321.495 kb on - strand, within OLJFJH_01815 at 321.576 kb on + strand at 321.577 kb on - strand at 321.581 kb on + strand at 321.582 kb on - strand at 321.582 kb on - strand at 321.641 kb on + strand at 321.693 kb on - strand at 321.825 kb on + strand, within OLJFJH_01820 at 322.098 kb on + strand, within OLJFJH_01820 at 322.346 kb on - strand, within OLJFJH_01820 at 322.401 kb on + strand, within OLJFJH_01820 at 322.402 kb on - strand, within OLJFJH_01820 at 322.402 kb on - strand, within OLJFJH_01820 at 322.402 kb on - strand, within OLJFJH_01820 at 322.487 kb on - strand, within OLJFJH_01820 at 322.520 kb on - strand at 322.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 319,801 + OLJFJH_01805 0.79 +1.2 319,802 - OLJFJH_01805 0.79 -0.2 319,802 - OLJFJH_01805 0.79 +1.4 319,942 + OLJFJH_01805 0.87 +0.2 319,942 + OLJFJH_01805 0.87 +1.9 319,943 - OLJFJH_01805 0.87 +0.4 320,164 + +2.3 320,164 + -0.8 320,165 - -1.6 320,181 - +2.2 320,313 + OLJFJH_01810 0.19 +3.0 320,402 + OLJFJH_01810 0.34 +1.5 320,418 + OLJFJH_01810 0.37 -1.1 320,418 + OLJFJH_01810 0.37 -0.2 320,418 + OLJFJH_01810 0.37 +1.2 320,419 - OLJFJH_01810 0.37 -1.0 320,546 + OLJFJH_01810 0.60 +2.1 320,585 + OLJFJH_01810 0.66 +1.6 320,585 + OLJFJH_01810 0.66 +1.1 321,010 + OLJFJH_01815 0.29 +1.2 321,011 - OLJFJH_01815 0.29 +0.2 321,212 + OLJFJH_01815 0.54 +0.7 321,212 + OLJFJH_01815 0.54 +0.9 321,212 + OLJFJH_01815 0.54 +2.3 321,212 + OLJFJH_01815 0.54 +1.8 321,212 + OLJFJH_01815 0.54 +1.0 321,213 - OLJFJH_01815 0.54 -0.2 321,213 - OLJFJH_01815 0.54 +0.0 321,494 + OLJFJH_01815 0.88 -1.3 321,495 - OLJFJH_01815 0.88 +0.1 321,495 - OLJFJH_01815 0.88 +0.0 321,495 - OLJFJH_01815 0.88 +0.5 321,576 + -1.2 321,577 - +0.9 321,581 + +0.8 321,582 - -1.5 321,582 - -2.1 321,641 + +0.8 321,693 - -0.8 321,825 + OLJFJH_01820 0.22 +0.8 322,098 + OLJFJH_01820 0.49 +4.0 322,346 - OLJFJH_01820 0.74 +1.1 322,401 + OLJFJH_01820 0.79 +0.8 322,402 - OLJFJH_01820 0.79 +2.3 322,402 - OLJFJH_01820 0.79 -0.3 322,402 - OLJFJH_01820 0.79 +0.5 322,487 - OLJFJH_01820 0.88 -0.1 322,520 - +0.8 322,520 - +1.7
Or see this region's nucleotide sequence