Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01795 and OLJFJH_01800 are separated by 96 nucleotides OLJFJH_01800 and OLJFJH_01805 overlap by 4 nucleotides
OLJFJH_01795: OLJFJH_01795 - type VI secretion system ATPase TssH, at 314,542 to 317,157
_01795
OLJFJH_01800: OLJFJH_01800 - Type VI secretion system core protein, at 317,254 to 318,318
_01800
OLJFJH_01805: OLJFJH_01805 - type VI secretion system baseplate subunit TssF, at 318,315 to 320,189
_01805
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 316.607 kb on + strand, within OLJFJH_01795 at 316.607 kb on + strand, within OLJFJH_01795 at 316.608 kb on - strand, within OLJFJH_01795 at 316.608 kb on - strand, within OLJFJH_01795 at 316.999 kb on + strand at 317.054 kb on + strand at 317.054 kb on + strand at 317.055 kb on - strand at 317.103 kb on + strand at 317.103 kb on + strand at 317.104 kb on - strand at 317.104 kb on - strand at 317.108 kb on - strand at 317.134 kb on + strand at 317.170 kb on + strand at 317.170 kb on + strand at 317.170 kb on + strand at 317.170 kb on + strand at 317.175 kb on - strand at 317.177 kb on + strand at 317.177 kb on + strand at 317.178 kb on - strand at 317.178 kb on - strand at 317.205 kb on + strand at 317.238 kb on - strand at 317.496 kb on - strand, within OLJFJH_01800 at 317.542 kb on + strand, within OLJFJH_01800 at 317.543 kb on - strand, within OLJFJH_01800 at 317.981 kb on + strand, within OLJFJH_01800 at 318.318 kb on + strand at 318.622 kb on + strand, within OLJFJH_01805 at 318.622 kb on + strand, within OLJFJH_01805 at 318.623 kb on - strand, within OLJFJH_01805 at 318.688 kb on + strand, within OLJFJH_01805 at 318.857 kb on + strand, within OLJFJH_01805 at 318.857 kb on + strand, within OLJFJH_01805 at 318.858 kb on - strand, within OLJFJH_01805 at 318.880 kb on + strand, within OLJFJH_01805 at 318.934 kb on - strand, within OLJFJH_01805 at 318.949 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.018 kb on + strand, within OLJFJH_01805 at 319.019 kb on - strand, within OLJFJH_01805 at 319.019 kb on - strand, within OLJFJH_01805 at 319.105 kb on + strand, within OLJFJH_01805 at 319.106 kb on - strand, within OLJFJH_01805 at 319.106 kb on - strand, within OLJFJH_01805 at 319.168 kb on + strand, within OLJFJH_01805 at 319.168 kb on + strand, within OLJFJH_01805 at 319.169 kb on - strand, within OLJFJH_01805 at 319.169 kb on - strand, within OLJFJH_01805 at 319.306 kb on - strand, within OLJFJH_01805
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 316,607 + OLJFJH_01795 0.79 +0.5 316,607 + OLJFJH_01795 0.79 +0.9 316,608 - OLJFJH_01795 0.79 -1.1 316,608 - OLJFJH_01795 0.79 +1.9 316,999 + +7.6 317,054 + +0.4 317,054 + +3.2 317,055 - +0.9 317,103 + +1.3 317,103 + +2.8 317,104 - +4.2 317,104 - +1.7 317,108 - -0.5 317,134 + +2.0 317,170 + +2.8 317,170 + +1.6 317,170 + +0.4 317,170 + +1.0 317,175 - -1.4 317,177 + +2.6 317,177 + +0.2 317,178 - -1.2 317,178 - -0.3 317,205 + +1.6 317,238 - +0.6 317,496 - OLJFJH_01800 0.23 +0.3 317,542 + OLJFJH_01800 0.27 +2.3 317,543 - OLJFJH_01800 0.27 +1.5 317,981 + OLJFJH_01800 0.68 +6.8 318,318 + +1.0 318,622 + OLJFJH_01805 0.16 +0.6 318,622 + OLJFJH_01805 0.16 +0.2 318,623 - OLJFJH_01805 0.16 -0.8 318,688 + OLJFJH_01805 0.20 +3.0 318,857 + OLJFJH_01805 0.29 +1.8 318,857 + OLJFJH_01805 0.29 +0.2 318,858 - OLJFJH_01805 0.29 -0.3 318,880 + OLJFJH_01805 0.30 +1.2 318,934 - OLJFJH_01805 0.33 -0.2 318,949 + OLJFJH_01805 0.34 +2.7 319,018 + OLJFJH_01805 0.37 +1.0 319,018 + OLJFJH_01805 0.37 +1.0 319,018 + OLJFJH_01805 0.37 -1.9 319,018 + OLJFJH_01805 0.37 +3.3 319,019 - OLJFJH_01805 0.38 +4.1 319,019 - OLJFJH_01805 0.38 -0.4 319,105 + OLJFJH_01805 0.42 +0.6 319,106 - OLJFJH_01805 0.42 -0.1 319,106 - OLJFJH_01805 0.42 +0.9 319,168 + OLJFJH_01805 0.45 +1.1 319,168 + OLJFJH_01805 0.45 +1.7 319,169 - OLJFJH_01805 0.46 -0.5 319,169 - OLJFJH_01805 0.46 +0.0 319,306 - OLJFJH_01805 0.53 -1.7
Or see this region's nucleotide sequence