Strain Fitness in Erwinia amylovora T8 around OLJFJH_01670

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01665 and OLJFJH_01670 are separated by 444 nucleotidesOLJFJH_01670 and OLJFJH_01675 are separated by 61 nucleotides OLJFJH_01665: OLJFJH_01665 - acyltransferase, at 279,956 to 281,095 _01665 OLJFJH_01670: OLJFJH_01670 - DNA-3-methyladenine glycosylase I, at 281,540 to 282,184 _01670 OLJFJH_01675: OLJFJH_01675 - ADP-ribosylglycohydrolase, at 282,246 to 283,340 _01675 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1 2 3 4at 280.593 kb on - strand, within OLJFJH_01665at 280.906 kb on + strand, within OLJFJH_01665at 280.942 kb on - strand, within OLJFJH_01665at 280.951 kb on + strand, within OLJFJH_01665at 280.951 kb on + strand, within OLJFJH_01665at 280.952 kb on - strand, within OLJFJH_01665at 280.987 kb on + strandat 281.048 kb on - strandat 281.479 kb on + strandat 281.504 kb on + strandat 281.504 kb on + strandat 281.505 kb on - strandat 281.541 kb on + strandat 281.542 kb on - strandat 281.555 kb on + strandat 281.556 kb on - strandat 281.845 kb on + strand, within OLJFJH_01670at 281.846 kb on - strand, within OLJFJH_01670at 281.846 kb on - strand, within OLJFJH_01670at 281.925 kb on + strand, within OLJFJH_01670at 282.091 kb on - strand, within OLJFJH_01670at 282.269 kb on - strandat 282.600 kb on - strand, within OLJFJH_01675at 282.955 kb on + strand, within OLJFJH_01675at 283.011 kb on - strand, within OLJFJH_01675at 283.135 kb on - strand, within OLJFJH_01675

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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280,593 - OLJFJH_01665 0.56 +0.7
280,906 + OLJFJH_01665 0.83 -1.3
280,942 - OLJFJH_01665 0.86 +1.4
280,951 + OLJFJH_01665 0.87 -0.8
280,951 + OLJFJH_01665 0.87 +0.4
280,952 - OLJFJH_01665 0.87 +1.5
280,987 + +0.1
281,048 - +0.7
281,479 + -0.6
281,504 + -0.6
281,504 + -0.4
281,505 - -0.7
281,541 + -0.1
281,542 - +0.3
281,555 + -0.2
281,556 - +0.7
281,845 + OLJFJH_01670 0.47 -1.4
281,846 - OLJFJH_01670 0.47 +1.1
281,846 - OLJFJH_01670 0.47 +1.0
281,925 + OLJFJH_01670 0.60 +0.8
282,091 - OLJFJH_01670 0.85 +4.6
282,269 - -0.3
282,600 - OLJFJH_01675 0.32 +0.9
282,955 + OLJFJH_01675 0.65 +0.4
283,011 - OLJFJH_01675 0.70 +1.6
283,135 - OLJFJH_01675 0.81 +0.0

Or see this region's nucleotide sequence