Strain Fitness in Erwinia amylovora T8 around OLJFJH_01615

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01605 and OLJFJH_01610 are separated by 146 nucleotidesOLJFJH_01610 and OLJFJH_01615 are separated by 73 nucleotidesOLJFJH_01615 and OLJFJH_01620 are separated by 63 nucleotides OLJFJH_01605: OLJFJH_01605 - type II toxin-antitoxin system HipA family toxin YjjJ, at 268,876 to 270,216 _01605 OLJFJH_01610: OLJFJH_01610 - purine-nucleoside phosphorylase, at 270,363 to 271,082 _01610 OLJFJH_01615: OLJFJH_01615 - phosphopentomutase, at 271,156 to 272,379 _01615 OLJFJH_01620: OLJFJH_01620 - thymidine phosphorylase, at 272,443 to 273,765 _01620 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 270.191 kb on - strandat 270.364 kb on + strandat 270.524 kb on - strand, within OLJFJH_01610at 270.524 kb on - strand, within OLJFJH_01610at 270.602 kb on - strand, within OLJFJH_01610at 270.824 kb on + strand, within OLJFJH_01610at 270.869 kb on + strand, within OLJFJH_01610at 270.869 kb on + strand, within OLJFJH_01610at 270.869 kb on + strand, within OLJFJH_01610at 270.870 kb on - strand, within OLJFJH_01610at 270.870 kb on - strand, within OLJFJH_01610at 270.923 kb on + strand, within OLJFJH_01610at 270.925 kb on + strand, within OLJFJH_01610at 270.925 kb on + strand, within OLJFJH_01610at 270.925 kb on + strand, within OLJFJH_01610at 270.925 kb on + strand, within OLJFJH_01610at 270.925 kb on + strand, within OLJFJH_01610at 270.926 kb on - strand, within OLJFJH_01610at 270.936 kb on - strand, within OLJFJH_01610at 270.970 kb on - strand, within OLJFJH_01610at 271.067 kb on + strandat 271.067 kb on + strandat 271.068 kb on - strandat 271.068 kb on - strandat 271.068 kb on - strandat 271.086 kb on + strandat 271.093 kb on + strandat 271.094 kb on - strandat 271.138 kb on + strandat 271.139 kb on - strandat 271.347 kb on + strand, within OLJFJH_01615at 271.573 kb on - strand, within OLJFJH_01615at 271.589 kb on + strand, within OLJFJH_01615at 271.589 kb on + strand, within OLJFJH_01615at 271.589 kb on + strand, within OLJFJH_01615at 271.589 kb on + strand, within OLJFJH_01615at 271.590 kb on - strand, within OLJFJH_01615at 271.590 kb on - strand, within OLJFJH_01615at 271.590 kb on - strand, within OLJFJH_01615at 271.872 kb on + strand, within OLJFJH_01615at 271.873 kb on - strand, within OLJFJH_01615at 271.874 kb on + strand, within OLJFJH_01615at 271.988 kb on - strand, within OLJFJH_01615at 272.117 kb on + strand, within OLJFJH_01615at 272.117 kb on + strand, within OLJFJH_01615at 272.118 kb on - strand, within OLJFJH_01615at 272.123 kb on + strand, within OLJFJH_01615at 272.149 kb on - strand, within OLJFJH_01615at 272.193 kb on + strand, within OLJFJH_01615at 272.194 kb on - strand, within OLJFJH_01615at 272.197 kb on + strand, within OLJFJH_01615at 272.198 kb on - strand, within OLJFJH_01615at 272.204 kb on - strand, within OLJFJH_01615at 272.364 kb on + strandat 272.364 kb on + strandat 272.365 kb on - strandat 272.365 kb on - strandat 272.365 kb on - strandat 272.466 kb on + strandat 272.467 kb on - strandat 272.631 kb on - strand, within OLJFJH_01620at 272.631 kb on - strand, within OLJFJH_01620at 272.735 kb on + strand, within OLJFJH_01620at 272.736 kb on - strand, within OLJFJH_01620at 272.745 kb on + strand, within OLJFJH_01620at 272.745 kb on + strand, within OLJFJH_01620at 272.746 kb on - strand, within OLJFJH_01620at 272.749 kb on + strand, within OLJFJH_01620at 272.749 kb on + strand, within OLJFJH_01620at 272.769 kb on - strand, within OLJFJH_01620at 272.769 kb on - strand, within OLJFJH_01620at 272.788 kb on - strand, within OLJFJH_01620at 272.788 kb on - strand, within OLJFJH_01620at 272.961 kb on + strand, within OLJFJH_01620at 273.066 kb on + strand, within OLJFJH_01620at 273.085 kb on + strand, within OLJFJH_01620at 273.096 kb on + strand, within OLJFJH_01620at 273.097 kb on - strand, within OLJFJH_01620at 273.157 kb on + strand, within OLJFJH_01620at 273.157 kb on + strand, within OLJFJH_01620at 273.157 kb on + strand, within OLJFJH_01620at 273.157 kb on + strand, within OLJFJH_01620at 273.235 kb on + strand, within OLJFJH_01620at 273.249 kb on + strand, within OLJFJH_01620at 273.250 kb on - strand, within OLJFJH_01620at 273.264 kb on - strand, within OLJFJH_01620

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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270,191 - -0.5
270,364 + -0.9
270,524 - OLJFJH_01610 0.22 -1.3
270,524 - OLJFJH_01610 0.22 -1.2
270,602 - OLJFJH_01610 0.33 -1.3
270,824 + OLJFJH_01610 0.64 -0.3
270,869 + OLJFJH_01610 0.70 -2.8
270,869 + OLJFJH_01610 0.70 +0.1
270,869 + OLJFJH_01610 0.70 +0.0
270,870 - OLJFJH_01610 0.70 -0.3
270,870 - OLJFJH_01610 0.70 -0.2
270,923 + OLJFJH_01610 0.78 -0.5
270,925 + OLJFJH_01610 0.78 -0.8
270,925 + OLJFJH_01610 0.78 +0.1
270,925 + OLJFJH_01610 0.78 -0.4
270,925 + OLJFJH_01610 0.78 -0.4
270,925 + OLJFJH_01610 0.78 -0.1
270,926 - OLJFJH_01610 0.78 -0.4
270,936 - OLJFJH_01610 0.80 -0.1
270,970 - OLJFJH_01610 0.84 +1.1
271,067 + -0.2
271,067 + -1.5
271,068 - -1.0
271,068 - -0.5
271,068 - -0.1
271,086 + -0.5
271,093 + -1.5
271,094 - -0.7
271,138 + +4.0
271,139 - +0.2
271,347 + OLJFJH_01615 0.16 -0.9
271,573 - OLJFJH_01615 0.34 +0.1
271,589 + OLJFJH_01615 0.35 -1.5
271,589 + OLJFJH_01615 0.35 -1.2
271,589 + OLJFJH_01615 0.35 -1.3
271,589 + OLJFJH_01615 0.35 -0.7
271,590 - OLJFJH_01615 0.35 -1.3
271,590 - OLJFJH_01615 0.35 -0.6
271,590 - OLJFJH_01615 0.35 -0.7
271,872 + OLJFJH_01615 0.58 -0.7
271,873 - OLJFJH_01615 0.59 -1.3
271,874 + OLJFJH_01615 0.59 -0.4
271,988 - OLJFJH_01615 0.68 -0.0
272,117 + OLJFJH_01615 0.79 -0.7
272,117 + OLJFJH_01615 0.79 -1.2
272,118 - OLJFJH_01615 0.79 -1.7
272,123 + OLJFJH_01615 0.79 -0.4
272,149 - OLJFJH_01615 0.81 +0.9
272,193 + OLJFJH_01615 0.85 -0.1
272,194 - OLJFJH_01615 0.85 -1.2
272,197 + OLJFJH_01615 0.85 -1.0
272,198 - OLJFJH_01615 0.85 -1.9
272,204 - OLJFJH_01615 0.86 -0.4
272,364 + -1.3
272,364 + +1.9
272,365 - -0.3
272,365 - -2.1
272,365 - -0.8
272,466 + -0.2
272,467 - -0.0
272,631 - OLJFJH_01620 0.14 -0.1
272,631 - OLJFJH_01620 0.14 -0.1
272,735 + OLJFJH_01620 0.22 -1.1
272,736 - OLJFJH_01620 0.22 +2.4
272,745 + OLJFJH_01620 0.23 +3.7
272,745 + OLJFJH_01620 0.23 +0.9
272,746 - OLJFJH_01620 0.23 -0.6
272,749 + OLJFJH_01620 0.23 -0.9
272,749 + OLJFJH_01620 0.23 -0.0
272,769 - OLJFJH_01620 0.25 +0.9
272,769 - OLJFJH_01620 0.25 -0.6
272,788 - OLJFJH_01620 0.26 -0.6
272,788 - OLJFJH_01620 0.26 +1.7
272,961 + OLJFJH_01620 0.39 -1.4
273,066 + OLJFJH_01620 0.47 -0.2
273,085 + OLJFJH_01620 0.49 +0.4
273,096 + OLJFJH_01620 0.49 +0.1
273,097 - OLJFJH_01620 0.49 +0.1
273,157 + OLJFJH_01620 0.54 +0.3
273,157 + OLJFJH_01620 0.54 -0.4
273,157 + OLJFJH_01620 0.54 -1.2
273,157 + OLJFJH_01620 0.54 -0.1
273,235 + OLJFJH_01620 0.60 -0.2
273,249 + OLJFJH_01620 0.61 -0.2
273,250 - OLJFJH_01620 0.61 +1.1
273,264 - OLJFJH_01620 0.62 -3.5

Or see this region's nucleotide sequence