Strain Fitness in Erwinia amylovora T8 around OLJFJH_01395

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01385 and OLJFJH_01390 are separated by 189 nucleotidesOLJFJH_01390 and OLJFJH_01395 are separated by 132 nucleotidesOLJFJH_01395 and OLJFJH_01400 are separated by 14 nucleotides OLJFJH_01385: OLJFJH_01385 - type 3 dihydrofolate reductase, at 219,129 to 219,611 _01385 OLJFJH_01390: OLJFJH_01390 - lysine transporter LysE, at 219,801 to 220,415 _01390 OLJFJH_01395: OLJFJH_01395 - carbamoyl-phosphate synthase large subunit, at 220,548 to 223,772 _01395 OLJFJH_01400: OLJFJH_01400 - carbamoyl phosphate synthase small subunit, at 223,787 to 224,935 _01400 Position (kb) 220 221 222 223 224Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 219.614 kb on - strandat 219.614 kb on - strandat 219.648 kb on - strandat 219.648 kb on - strandat 219.648 kb on - strandat 219.651 kb on + strandat 219.651 kb on + strandat 219.686 kb on + strandat 219.691 kb on - strandat 219.691 kb on - strandat 219.711 kb on - strandat 219.800 kb on + strandat 219.800 kb on + strandat 219.801 kb on - strandat 219.801 kb on - strandat 219.818 kb on - strandat 220.111 kb on + strand, within OLJFJH_01390at 220.205 kb on + strand, within OLJFJH_01390at 220.252 kb on - strand, within OLJFJH_01390at 220.252 kb on - strand, within OLJFJH_01390at 220.325 kb on - strand, within OLJFJH_01390at 220.341 kb on - strand, within OLJFJH_01390at 220.341 kb on - strand, within OLJFJH_01390at 220.497 kb on + strandat 220.497 kb on + strandat 220.498 kb on - strandat 220.498 kb on - strandat 220.498 kb on - strandat 220.550 kb on - strandat 220.642 kb on - strandat 220.666 kb on + strandat 220.667 kb on - strandat 220.667 kb on - strandat 220.667 kb on - strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.739 kb on - strandat 220.739 kb on - strandat 220.772 kb on + strandat 220.773 kb on - strandat 220.809 kb on + strandat 220.904 kb on + strand, within OLJFJH_01395at 220.959 kb on - strand, within OLJFJH_01395at 221.022 kb on + strand, within OLJFJH_01395at 221.023 kb on - strand, within OLJFJH_01395at 221.023 kb on - strand, within OLJFJH_01395at 221.261 kb on - strand, within OLJFJH_01395at 221.376 kb on - strand, within OLJFJH_01395at 221.429 kb on + strand, within OLJFJH_01395at 221.429 kb on + strand, within OLJFJH_01395at 221.563 kb on + strand, within OLJFJH_01395at 221.563 kb on + strand, within OLJFJH_01395at 221.620 kb on + strand, within OLJFJH_01395at 221.621 kb on - strand, within OLJFJH_01395at 221.924 kb on - strand, within OLJFJH_01395at 221.924 kb on - strand, within OLJFJH_01395at 221.944 kb on + strand, within OLJFJH_01395at 222.034 kb on + strand, within OLJFJH_01395at 222.133 kb on + strand, within OLJFJH_01395at 222.133 kb on + strand, within OLJFJH_01395at 222.134 kb on - strand, within OLJFJH_01395at 222.142 kb on + strand, within OLJFJH_01395at 222.142 kb on + strand, within OLJFJH_01395at 222.143 kb on - strand, within OLJFJH_01395at 222.148 kb on + strand, within OLJFJH_01395at 222.148 kb on + strand, within OLJFJH_01395at 222.149 kb on - strand, within OLJFJH_01395at 222.196 kb on + strand, within OLJFJH_01395at 222.197 kb on - strand, within OLJFJH_01395at 222.317 kb on - strand, within OLJFJH_01395at 222.321 kb on - strand, within OLJFJH_01395at 222.460 kb on + strand, within OLJFJH_01395at 222.460 kb on + strand, within OLJFJH_01395at 222.461 kb on - strand, within OLJFJH_01395at 222.712 kb on + strand, within OLJFJH_01395at 222.712 kb on + strand, within OLJFJH_01395at 222.712 kb on + strand, within OLJFJH_01395at 222.713 kb on - strand, within OLJFJH_01395at 222.782 kb on + strand, within OLJFJH_01395at 222.783 kb on - strand, within OLJFJH_01395at 223.029 kb on - strand, within OLJFJH_01395at 223.085 kb on + strand, within OLJFJH_01395at 223.224 kb on - strand, within OLJFJH_01395at 223.274 kb on + strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.322 kb on + strand, within OLJFJH_01395at 223.579 kb on + strandat 223.579 kb on + strandat 223.579 kb on + strandat 223.579 kb on + strandat 223.611 kb on - strandat 223.611 kb on - strandat 223.691 kb on - strandat 223.691 kb on - strandat 223.760 kb on + strandat 223.926 kb on - strand, within OLJFJH_01400at 223.949 kb on - strand, within OLJFJH_01400at 224.029 kb on + strand, within OLJFJH_01400at 224.030 kb on - strand, within OLJFJH_01400at 224.032 kb on + strand, within OLJFJH_01400at 224.114 kb on + strand, within OLJFJH_01400at 224.149 kb on + strand, within OLJFJH_01400at 224.314 kb on + strand, within OLJFJH_01400at 224.315 kb on - strand, within OLJFJH_01400at 224.315 kb on - strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.434 kb on - strand, within OLJFJH_01400at 224.434 kb on - strand, within OLJFJH_01400at 224.539 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.543 kb on - strand, within OLJFJH_01400at 224.681 kb on + strand, within OLJFJH_01400at 224.766 kb on + strand, within OLJFJH_01400at 224.770 kb on + strand, within OLJFJH_01400at 224.771 kb on - strand, within OLJFJH_01400at 224.771 kb on - strand, within OLJFJH_01400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
remove
219,614 - -0.2
219,614 - +1.0
219,648 - -0.8
219,648 - +0.0
219,648 - +0.6
219,651 + -3.0
219,651 + -2.1
219,686 + -0.0
219,691 - -0.5
219,691 - +0.8
219,711 - -1.0
219,800 + +0.5
219,800 + +1.0
219,801 - +0.7
219,801 - -0.5
219,818 - -0.2
220,111 + OLJFJH_01390 0.50 +2.2
220,205 + OLJFJH_01390 0.66 +1.9
220,252 - OLJFJH_01390 0.73 +1.4
220,252 - OLJFJH_01390 0.73 +0.1
220,325 - OLJFJH_01390 0.85 -0.2
220,341 - OLJFJH_01390 0.88 -2.0
220,341 - OLJFJH_01390 0.88 -0.6
220,497 + -0.5
220,497 + -0.5
220,498 - +3.1
220,498 - -0.6
220,498 - -0.3
220,550 - -0.6
220,642 - -3.6
220,666 + -1.1
220,667 - -2.9
220,667 - -3.0
220,667 - -2.7
220,736 + -3.5
220,736 + -4.1
220,736 + -3.3
220,736 + -3.4
220,736 + +0.2
220,737 - -1.0
220,737 - -1.0
220,737 - -1.6
220,737 - -2.4
220,738 + -3.8
220,738 + -2.0
220,738 + -3.2
220,738 + +1.0
220,739 - -2.1
220,739 - -2.8
220,772 + -0.2
220,773 - -2.6
220,809 + -5.0
220,904 + OLJFJH_01395 0.11 -2.5
220,959 - OLJFJH_01395 0.13 -2.5
221,022 + OLJFJH_01395 0.15 -2.2
221,023 - OLJFJH_01395 0.15 +0.4
221,023 - OLJFJH_01395 0.15 +0.0
221,261 - OLJFJH_01395 0.22 -2.3
221,376 - OLJFJH_01395 0.26 -1.3
221,429 + OLJFJH_01395 0.27 +0.4
221,429 + OLJFJH_01395 0.27 -2.9
221,563 + OLJFJH_01395 0.31 -3.3
221,563 + OLJFJH_01395 0.31 -4.0
221,620 + OLJFJH_01395 0.33 -0.8
221,621 - OLJFJH_01395 0.33 -1.8
221,924 - OLJFJH_01395 0.43 -3.8
221,924 - OLJFJH_01395 0.43 -2.9
221,944 + OLJFJH_01395 0.43 +1.4
222,034 + OLJFJH_01395 0.46 -1.7
222,133 + OLJFJH_01395 0.49 -4.0
222,133 + OLJFJH_01395 0.49 -3.1
222,134 - OLJFJH_01395 0.49 +0.4
222,142 + OLJFJH_01395 0.49 -2.8
222,142 + OLJFJH_01395 0.49 -2.7
222,143 - OLJFJH_01395 0.49 -3.8
222,148 + OLJFJH_01395 0.50 +0.8
222,148 + OLJFJH_01395 0.50 -3.7
222,149 - OLJFJH_01395 0.50 -2.3
222,196 + OLJFJH_01395 0.51 -2.3
222,197 - OLJFJH_01395 0.51 -3.3
222,317 - OLJFJH_01395 0.55 -0.4
222,321 - OLJFJH_01395 0.55 -1.0
222,460 + OLJFJH_01395 0.59 -2.6
222,460 + OLJFJH_01395 0.59 -3.1
222,461 - OLJFJH_01395 0.59 -2.8
222,712 + OLJFJH_01395 0.67 -3.1
222,712 + OLJFJH_01395 0.67 -1.0
222,712 + OLJFJH_01395 0.67 -3.0
222,713 - OLJFJH_01395 0.67 -0.2
222,782 + OLJFJH_01395 0.69 -1.9
222,783 - OLJFJH_01395 0.69 -2.9
223,029 - OLJFJH_01395 0.77 -2.2
223,085 + OLJFJH_01395 0.79 -1.7
223,224 - OLJFJH_01395 0.83 -3.4
223,274 + OLJFJH_01395 0.85 -3.9
223,275 - OLJFJH_01395 0.85 -3.8
223,275 - OLJFJH_01395 0.85 -3.7
223,275 - OLJFJH_01395 0.85 -4.9
223,275 - OLJFJH_01395 0.85 -2.3
223,322 + OLJFJH_01395 0.86 -3.0
223,579 + +0.4
223,579 + -2.8
223,579 + -4.4
223,579 + -5.6
223,611 - -4.9
223,611 - -2.6
223,691 - -1.6
223,691 - -3.2
223,760 + -1.3
223,926 - OLJFJH_01400 0.12 -2.8
223,949 - OLJFJH_01400 0.14 -2.8
224,029 + OLJFJH_01400 0.21 -3.2
224,030 - OLJFJH_01400 0.21 -2.3
224,032 + OLJFJH_01400 0.21 -1.9
224,114 + OLJFJH_01400 0.28 -2.3
224,149 + OLJFJH_01400 0.32 -1.6
224,314 + OLJFJH_01400 0.46 -3.4
224,315 - OLJFJH_01400 0.46 -2.6
224,315 - OLJFJH_01400 0.46 -2.1
224,326 + OLJFJH_01400 0.47 -0.8
224,326 + OLJFJH_01400 0.47 -2.4
224,326 + OLJFJH_01400 0.47 -0.7
224,431 + OLJFJH_01400 0.56 -1.7
224,431 + OLJFJH_01400 0.56 -1.5
224,431 + OLJFJH_01400 0.56 -4.2
224,431 + OLJFJH_01400 0.56 -2.0
224,431 + OLJFJH_01400 0.56 -3.6
224,431 + OLJFJH_01400 0.56 -0.8
224,431 + OLJFJH_01400 0.56 -2.3
224,431 + OLJFJH_01400 0.56 -2.3
224,432 - OLJFJH_01400 0.56 -2.5
224,432 - OLJFJH_01400 0.56 -1.9
224,432 - OLJFJH_01400 0.56 -2.1
224,432 - OLJFJH_01400 0.56 -1.1
224,432 - OLJFJH_01400 0.56 -0.4
224,432 - OLJFJH_01400 0.56 -2.5
224,432 - OLJFJH_01400 0.56 -3.4
224,432 - OLJFJH_01400 0.56 -1.3
224,432 - OLJFJH_01400 0.56 -2.8
224,432 - OLJFJH_01400 0.56 -1.2
224,432 - OLJFJH_01400 0.56 -3.0
224,432 - OLJFJH_01400 0.56 -1.8
224,432 - OLJFJH_01400 0.56 -3.7
224,432 - OLJFJH_01400 0.56 -2.3
224,432 - OLJFJH_01400 0.56 -3.4
224,432 - OLJFJH_01400 0.56 -2.9
224,434 - OLJFJH_01400 0.56 -4.4
224,434 - OLJFJH_01400 0.56 -3.3
224,539 + OLJFJH_01400 0.65 -2.0
224,542 + OLJFJH_01400 0.66 -2.0
224,542 + OLJFJH_01400 0.66 -3.9
224,542 + OLJFJH_01400 0.66 -5.4
224,543 - OLJFJH_01400 0.66 -1.7
224,681 + OLJFJH_01400 0.78 -2.7
224,766 + OLJFJH_01400 0.85 -1.4
224,770 + OLJFJH_01400 0.86 -3.0
224,771 - OLJFJH_01400 0.86 -3.3
224,771 - OLJFJH_01400 0.86 +0.0

Or see this region's nucleotide sequence