Strain Fitness in Erwinia amylovora T8 around OLJFJH_01390

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01380 and OLJFJH_01385 are separated by 41 nucleotidesOLJFJH_01385 and OLJFJH_01390 are separated by 189 nucleotidesOLJFJH_01390 and OLJFJH_01395 are separated by 132 nucleotides OLJFJH_01380: OLJFJH_01380 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 218,263 to 219,087 _01380 OLJFJH_01385: OLJFJH_01385 - type 3 dihydrofolate reductase, at 219,129 to 219,611 _01385 OLJFJH_01390: OLJFJH_01390 - lysine transporter LysE, at 219,801 to 220,415 _01390 OLJFJH_01395: OLJFJH_01395 - carbamoyl-phosphate synthase large subunit, at 220,548 to 223,772 _01395 Position (kb) 219 220 221Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 218.816 kb on - strand, within OLJFJH_01380at 218.923 kb on + strand, within OLJFJH_01380at 218.924 kb on - strand, within OLJFJH_01380at 218.924 kb on - strand, within OLJFJH_01380at 219.085 kb on + strandat 219.085 kb on + strandat 219.614 kb on - strandat 219.614 kb on - strandat 219.648 kb on - strandat 219.648 kb on - strandat 219.648 kb on - strandat 219.651 kb on + strandat 219.651 kb on + strandat 219.686 kb on + strandat 219.691 kb on - strandat 219.691 kb on - strandat 219.711 kb on - strandat 219.800 kb on + strandat 219.800 kb on + strandat 219.801 kb on - strandat 219.801 kb on - strandat 219.818 kb on - strandat 220.111 kb on + strand, within OLJFJH_01390at 220.205 kb on + strand, within OLJFJH_01390at 220.252 kb on - strand, within OLJFJH_01390at 220.252 kb on - strand, within OLJFJH_01390at 220.325 kb on - strand, within OLJFJH_01390at 220.341 kb on - strand, within OLJFJH_01390at 220.341 kb on - strand, within OLJFJH_01390at 220.497 kb on + strandat 220.497 kb on + strandat 220.498 kb on - strandat 220.498 kb on - strandat 220.498 kb on - strandat 220.550 kb on - strandat 220.642 kb on - strandat 220.666 kb on + strandat 220.667 kb on - strandat 220.667 kb on - strandat 220.667 kb on - strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.739 kb on - strandat 220.739 kb on - strandat 220.772 kb on + strandat 220.773 kb on - strandat 220.809 kb on + strandat 220.904 kb on + strand, within OLJFJH_01395at 220.959 kb on - strand, within OLJFJH_01395at 221.022 kb on + strand, within OLJFJH_01395at 221.023 kb on - strand, within OLJFJH_01395at 221.023 kb on - strand, within OLJFJH_01395at 221.261 kb on - strand, within OLJFJH_01395at 221.376 kb on - strand, within OLJFJH_01395

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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218,816 - OLJFJH_01380 0.67 -1.3
218,923 + OLJFJH_01380 0.80 -1.0
218,924 - OLJFJH_01380 0.80 -1.0
218,924 - OLJFJH_01380 0.80 -1.7
219,085 + -0.4
219,085 + -0.5
219,614 - -0.2
219,614 - +1.0
219,648 - -0.8
219,648 - +0.0
219,648 - +0.6
219,651 + -3.0
219,651 + -2.1
219,686 + -0.0
219,691 - -0.5
219,691 - +0.8
219,711 - -1.0
219,800 + +0.5
219,800 + +1.0
219,801 - +0.7
219,801 - -0.5
219,818 - -0.2
220,111 + OLJFJH_01390 0.50 +2.2
220,205 + OLJFJH_01390 0.66 +1.9
220,252 - OLJFJH_01390 0.73 +1.4
220,252 - OLJFJH_01390 0.73 +0.1
220,325 - OLJFJH_01390 0.85 -0.2
220,341 - OLJFJH_01390 0.88 -2.0
220,341 - OLJFJH_01390 0.88 -0.6
220,497 + -0.5
220,497 + -0.5
220,498 - +3.1
220,498 - -0.6
220,498 - -0.3
220,550 - -0.6
220,642 - -3.6
220,666 + -1.1
220,667 - -2.9
220,667 - -3.0
220,667 - -2.7
220,736 + -3.5
220,736 + -4.1
220,736 + -3.3
220,736 + -3.4
220,736 + +0.2
220,737 - -1.0
220,737 - -1.0
220,737 - -1.6
220,737 - -2.4
220,738 + -3.8
220,738 + -2.0
220,738 + -3.2
220,738 + +1.0
220,739 - -2.1
220,739 - -2.8
220,772 + -0.2
220,773 - -2.6
220,809 + -5.0
220,904 + OLJFJH_01395 0.11 -2.5
220,959 - OLJFJH_01395 0.13 -2.5
221,022 + OLJFJH_01395 0.15 -2.2
221,023 - OLJFJH_01395 0.15 +0.4
221,023 - OLJFJH_01395 0.15 +0.0
221,261 - OLJFJH_01395 0.22 -2.3
221,376 - OLJFJH_01395 0.26 -1.3

Or see this region's nucleotide sequence