Strain Fitness in Erwinia amylovora T8 around OLJFJH_01145

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01130 and OLJFJH_01135 overlap by 4 nucleotidesOLJFJH_01135 and OLJFJH_01140 overlap by 1 nucleotidesOLJFJH_01140 and OLJFJH_01145 overlap by 1 nucleotidesOLJFJH_01145 and OLJFJH_01150 are separated by 5 nucleotides OLJFJH_01130: OLJFJH_01130 - general secretion pathway protein GspH, at 158,733 to 159,218 _01130 OLJFJH_01135: OLJFJH_01135 - type II secretion system minor pseudopilin GspI, at 159,215 to 159,577 _01135 OLJFJH_01140: OLJFJH_01140 - type II secretion system minor pseudopilin GspJ, at 159,577 to 160,137 _01140 OLJFJH_01145: OLJFJH_01145 - type II secretion system minor pseudopilin GspK, at 160,137 to 161,030 _01145 OLJFJH_01150: OLJFJH_01150 - type II secretion system protein GspL, at 161,036 to 162,103 _01150 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 159.202 kb on + strandat 159.211 kb on + strandat 159.317 kb on - strand, within OLJFJH_01135at 159.383 kb on + strand, within OLJFJH_01135at 159.384 kb on - strand, within OLJFJH_01135at 159.394 kb on + strand, within OLJFJH_01135at 159.394 kb on + strand, within OLJFJH_01135at 159.395 kb on - strand, within OLJFJH_01135at 159.395 kb on - strand, within OLJFJH_01135at 159.395 kb on - strand, within OLJFJH_01135at 159.513 kb on + strand, within OLJFJH_01135at 159.513 kb on + strand, within OLJFJH_01135at 159.514 kb on - strand, within OLJFJH_01135at 159.597 kb on + strandat 159.662 kb on + strand, within OLJFJH_01140at 159.663 kb on - strand, within OLJFJH_01140at 159.817 kb on - strand, within OLJFJH_01140at 159.987 kb on + strand, within OLJFJH_01140at 160.000 kb on - strand, within OLJFJH_01140at 160.172 kb on - strandat 160.194 kb on - strandat 160.277 kb on + strand, within OLJFJH_01145at 160.278 kb on - strand, within OLJFJH_01145at 160.412 kb on + strand, within OLJFJH_01145at 160.496 kb on + strand, within OLJFJH_01145at 160.496 kb on + strand, within OLJFJH_01145at 160.496 kb on + strand, within OLJFJH_01145at 160.496 kb on + strand, within OLJFJH_01145at 160.497 kb on - strand, within OLJFJH_01145at 160.497 kb on - strand, within OLJFJH_01145at 160.497 kb on - strand, within OLJFJH_01145at 160.501 kb on + strand, within OLJFJH_01145at 160.501 kb on + strand, within OLJFJH_01145at 160.618 kb on + strand, within OLJFJH_01145at 160.619 kb on - strand, within OLJFJH_01145at 160.750 kb on + strand, within OLJFJH_01145at 160.751 kb on - strand, within OLJFJH_01145at 160.914 kb on + strand, within OLJFJH_01145at 160.915 kb on - strand, within OLJFJH_01145at 160.993 kb on - strandat 161.420 kb on + strand, within OLJFJH_01150at 161.439 kb on + strand, within OLJFJH_01150at 161.594 kb on - strand, within OLJFJH_01150at 161.594 kb on - strand, within OLJFJH_01150at 161.594 kb on - strand, within OLJFJH_01150at 161.682 kb on + strand, within OLJFJH_01150at 161.682 kb on + strand, within OLJFJH_01150at 161.683 kb on - strand, within OLJFJH_01150at 161.683 kb on - strand, within OLJFJH_01150at 161.762 kb on - strand, within OLJFJH_01150at 161.794 kb on - strand, within OLJFJH_01150at 161.810 kb on + strand, within OLJFJH_01150at 161.851 kb on - strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.862 kb on + strand, within OLJFJH_01150at 161.863 kb on - strand, within OLJFJH_01150at 161.863 kb on - strand, within OLJFJH_01150at 161.863 kb on - strand, within OLJFJH_01150at 161.863 kb on - strand, within OLJFJH_01150at 161.991 kb on + strand, within OLJFJH_01150at 161.992 kb on - strand, within OLJFJH_01150at 161.992 kb on - strand, within OLJFJH_01150at 162.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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159,202 + +1.1
159,211 + -0.0
159,317 - OLJFJH_01135 0.28 -0.5
159,383 + OLJFJH_01135 0.46 +0.8
159,384 - OLJFJH_01135 0.47 +0.5
159,394 + OLJFJH_01135 0.49 -0.3
159,394 + OLJFJH_01135 0.49 +0.3
159,395 - OLJFJH_01135 0.50 -0.2
159,395 - OLJFJH_01135 0.50 -1.5
159,395 - OLJFJH_01135 0.50 +0.2
159,513 + OLJFJH_01135 0.82 +0.4
159,513 + OLJFJH_01135 0.82 -0.8
159,514 - OLJFJH_01135 0.82 +1.3
159,597 + -0.9
159,662 + OLJFJH_01140 0.15 +0.0
159,663 - OLJFJH_01140 0.15 -1.3
159,817 - OLJFJH_01140 0.43 +0.9
159,987 + OLJFJH_01140 0.73 +1.1
160,000 - OLJFJH_01140 0.75 -0.5
160,172 - -0.1
160,194 - +0.0
160,277 + OLJFJH_01145 0.16 +0.1
160,278 - OLJFJH_01145 0.16 +1.1
160,412 + OLJFJH_01145 0.31 +0.1
160,496 + OLJFJH_01145 0.40 -0.8
160,496 + OLJFJH_01145 0.40 +2.2
160,496 + OLJFJH_01145 0.40 +0.6
160,496 + OLJFJH_01145 0.40 +0.8
160,497 - OLJFJH_01145 0.40 -1.5
160,497 - OLJFJH_01145 0.40 +0.4
160,497 - OLJFJH_01145 0.40 +1.1
160,501 + OLJFJH_01145 0.41 -2.6
160,501 + OLJFJH_01145 0.41 +0.1
160,618 + OLJFJH_01145 0.54 -0.5
160,619 - OLJFJH_01145 0.54 -0.1
160,750 + OLJFJH_01145 0.69 -0.4
160,751 - OLJFJH_01145 0.69 +5.3
160,914 + OLJFJH_01145 0.87 -0.6
160,915 - OLJFJH_01145 0.87 +2.3
160,993 - +0.1
161,420 + OLJFJH_01150 0.36 -1.0
161,439 + OLJFJH_01150 0.38 -0.9
161,594 - OLJFJH_01150 0.52 +0.2
161,594 - OLJFJH_01150 0.52 +2.9
161,594 - OLJFJH_01150 0.52 +0.0
161,682 + OLJFJH_01150 0.60 -0.3
161,682 + OLJFJH_01150 0.60 -0.4
161,683 - OLJFJH_01150 0.61 +0.0
161,683 - OLJFJH_01150 0.61 +0.4
161,762 - OLJFJH_01150 0.68 +0.5
161,794 - OLJFJH_01150 0.71 -0.1
161,810 + OLJFJH_01150 0.72 -2.7
161,851 - OLJFJH_01150 0.76 +0.5
161,862 + OLJFJH_01150 0.77 +0.4
161,862 + OLJFJH_01150 0.77 -0.5
161,862 + OLJFJH_01150 0.77 -0.6
161,862 + OLJFJH_01150 0.77 +1.0
161,862 + OLJFJH_01150 0.77 +1.0
161,862 + OLJFJH_01150 0.77 +0.6
161,862 + OLJFJH_01150 0.77 +0.3
161,863 - OLJFJH_01150 0.77 +0.2
161,863 - OLJFJH_01150 0.77 +0.4
161,863 - OLJFJH_01150 0.77 +0.1
161,863 - OLJFJH_01150 0.77 +0.6
161,991 + OLJFJH_01150 0.89 -1.6
161,992 - OLJFJH_01150 0.90 +0.0
161,992 - OLJFJH_01150 0.90 -0.7
162,015 + -0.1

Or see this region's nucleotide sequence