Strain Fitness in Erwinia amylovora T8 around OLJFJH_00815

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00805 and OLJFJH_00810 are separated by 22 nucleotidesOLJFJH_00810 and OLJFJH_00815 are separated by 99 nucleotidesOLJFJH_00815 and OLJFJH_00820 are separated by 253 nucleotidesOLJFJH_00820 and OLJFJH_00825 overlap by 22 nucleotides OLJFJH_00805: OLJFJH_00805 - ABC transporter, at 79,842 to 80,768 _00805 OLJFJH_00810: OLJFJH_00810 - carbonate dehydratase, at 80,791 to 81,663 _00810 OLJFJH_00815: OLJFJH_00815 - hypoxanthine phosphoribosyltransferase, at 81,763 to 82,299 _00815 OLJFJH_00820: OLJFJH_00820 - hypothetical protein, at 82,553 to 82,660 _00820 OLJFJH_00825: OLJFJH_00825 - cystathionine gamma-synthase family protein, at 82,639 to 83,832 _00825 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 80.768 kb on + strandat 80.768 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.794 kb on + strandat 80.795 kb on - strandat 80.849 kb on + strandat 80.849 kb on + strandat 80.858 kb on + strandat 80.867 kb on + strandat 80.907 kb on + strand, within OLJFJH_00810at 80.944 kb on + strand, within OLJFJH_00810at 80.960 kb on - strand, within OLJFJH_00810at 80.960 kb on - strand, within OLJFJH_00810at 80.960 kb on - strand, within OLJFJH_00810at 80.962 kb on - strand, within OLJFJH_00810at 80.965 kb on - strand, within OLJFJH_00810at 80.965 kb on - strand, within OLJFJH_00810at 80.999 kb on + strand, within OLJFJH_00810at 80.999 kb on + strand, within OLJFJH_00810at 81.000 kb on - strand, within OLJFJH_00810at 81.282 kb on + strand, within OLJFJH_00810at 81.383 kb on - strand, within OLJFJH_00810at 81.399 kb on - strand, within OLJFJH_00810at 81.401 kb on + strand, within OLJFJH_00810at 81.467 kb on - strand, within OLJFJH_00810at 81.600 kb on - strandat 81.701 kb on + strandat 81.701 kb on + strandat 81.702 kb on - strandat 81.705 kb on - strandat 81.705 kb on - strandat 81.706 kb on + strandat 81.706 kb on + strandat 81.764 kb on + strandat 81.765 kb on - strandat 81.868 kb on + strand, within OLJFJH_00815at 81.868 kb on + strand, within OLJFJH_00815at 81.869 kb on - strand, within OLJFJH_00815at 81.872 kb on + strand, within OLJFJH_00815at 81.872 kb on + strand, within OLJFJH_00815at 81.873 kb on - strand, within OLJFJH_00815at 81.981 kb on + strand, within OLJFJH_00815at 81.982 kb on - strand, within OLJFJH_00815at 81.998 kb on - strand, within OLJFJH_00815at 82.013 kb on - strand, within OLJFJH_00815at 82.161 kb on + strand, within OLJFJH_00815at 82.162 kb on - strand, within OLJFJH_00815at 82.174 kb on + strand, within OLJFJH_00815at 82.278 kb on + strandat 82.436 kb on + strandat 82.436 kb on + strandat 82.436 kb on + strandat 82.437 kb on - strandat 82.437 kb on - strandat 82.440 kb on + strandat 82.441 kb on - strandat 82.459 kb on - strandat 82.524 kb on + strandat 82.524 kb on + strandat 82.524 kb on + strandat 82.524 kb on + strandat 82.524 kb on + strandat 82.525 kb on - strandat 82.625 kb on + strand, within OLJFJH_00820at 82.625 kb on + strand, within OLJFJH_00820at 82.626 kb on - strand, within OLJFJH_00820at 82.729 kb on + strandat 82.730 kb on - strandat 82.791 kb on + strand, within OLJFJH_00825at 82.791 kb on + strand, within OLJFJH_00825at 82.834 kb on + strand, within OLJFJH_00825at 82.834 kb on + strand, within OLJFJH_00825at 82.834 kb on + strand, within OLJFJH_00825at 82.835 kb on - strand, within OLJFJH_00825at 82.835 kb on - strand, within OLJFJH_00825at 82.890 kb on + strand, within OLJFJH_00825at 82.890 kb on + strand, within OLJFJH_00825at 82.891 kb on - strand, within OLJFJH_00825at 82.891 kb on - strand, within OLJFJH_00825at 82.971 kb on + strand, within OLJFJH_00825at 83.199 kb on + strand, within OLJFJH_00825at 83.203 kb on - strand, within OLJFJH_00825at 83.275 kb on + strand, within OLJFJH_00825at 83.275 kb on + strand, within OLJFJH_00825at 83.275 kb on + strand, within OLJFJH_00825at 83.275 kb on + strand, within OLJFJH_00825at 83.276 kb on - strand, within OLJFJH_00825at 83.276 kb on - strand, within OLJFJH_00825at 83.276 kb on - strand, within OLJFJH_00825

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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80,768 + -0.1
80,768 + +0.5
80,794 + -1.0
80,794 + -0.6
80,794 + +2.6
80,794 + -1.5
80,794 + -0.9
80,795 - +0.4
80,849 + +4.5
80,849 + -0.1
80,858 + -0.2
80,867 + -0.7
80,907 + OLJFJH_00810 0.13 +0.2
80,944 + OLJFJH_00810 0.18 -0.7
80,960 - OLJFJH_00810 0.19 -0.1
80,960 - OLJFJH_00810 0.19 -0.0
80,960 - OLJFJH_00810 0.19 -1.4
80,962 - OLJFJH_00810 0.20 +0.0
80,965 - OLJFJH_00810 0.20 -1.8
80,965 - OLJFJH_00810 0.20 +0.5
80,999 + OLJFJH_00810 0.24 -0.8
80,999 + OLJFJH_00810 0.24 -0.1
81,000 - OLJFJH_00810 0.24 -1.4
81,282 + OLJFJH_00810 0.56 +0.5
81,383 - OLJFJH_00810 0.68 -2.1
81,399 - OLJFJH_00810 0.70 +0.0
81,401 + OLJFJH_00810 0.70 -2.2
81,467 - OLJFJH_00810 0.77 -0.1
81,600 - -0.4
81,701 + -0.4
81,701 + -0.6
81,702 - +0.3
81,705 - +2.1
81,705 - -0.8
81,706 + -0.2
81,706 + -0.0
81,764 + -0.5
81,765 - -0.4
81,868 + OLJFJH_00815 0.20 -0.6
81,868 + OLJFJH_00815 0.20 +0.6
81,869 - OLJFJH_00815 0.20 +0.1
81,872 + OLJFJH_00815 0.20 +0.5
81,872 + OLJFJH_00815 0.20 -1.4
81,873 - OLJFJH_00815 0.20 -0.6
81,981 + OLJFJH_00815 0.41 -1.3
81,982 - OLJFJH_00815 0.41 -0.6
81,998 - OLJFJH_00815 0.44 -1.2
82,013 - OLJFJH_00815 0.47 -1.2
82,161 + OLJFJH_00815 0.74 -1.2
82,162 - OLJFJH_00815 0.74 -0.6
82,174 + OLJFJH_00815 0.77 -3.3
82,278 + -0.6
82,436 + -1.5
82,436 + +3.3
82,436 + -0.2
82,437 - +0.8
82,437 - +1.2
82,440 + +1.1
82,441 - -0.2
82,459 - +2.5
82,524 + -0.9
82,524 + -0.9
82,524 + -1.6
82,524 + -0.9
82,524 + -0.1
82,525 - +1.4
82,625 + OLJFJH_00820 0.67 -0.1
82,625 + OLJFJH_00820 0.67 +0.8
82,626 - OLJFJH_00820 0.68 +0.9
82,729 + -0.3
82,730 - -0.3
82,791 + OLJFJH_00825 0.13 +2.0
82,791 + OLJFJH_00825 0.13 +0.6
82,834 + OLJFJH_00825 0.16 -0.2
82,834 + OLJFJH_00825 0.16 +1.4
82,834 + OLJFJH_00825 0.16 +0.6
82,835 - OLJFJH_00825 0.16 +0.6
82,835 - OLJFJH_00825 0.16 +0.9
82,890 + OLJFJH_00825 0.21 +0.3
82,890 + OLJFJH_00825 0.21 +1.4
82,891 - OLJFJH_00825 0.21 -0.8
82,891 - OLJFJH_00825 0.21 -0.1
82,971 + OLJFJH_00825 0.28 -0.5
83,199 + OLJFJH_00825 0.47 +0.6
83,203 - OLJFJH_00825 0.47 -1.0
83,275 + OLJFJH_00825 0.53 +2.3
83,275 + OLJFJH_00825 0.53 +0.3
83,275 + OLJFJH_00825 0.53 -0.5
83,275 + OLJFJH_00825 0.53 +0.6
83,276 - OLJFJH_00825 0.53 -0.7
83,276 - OLJFJH_00825 0.53 +0.5
83,276 - OLJFJH_00825 0.53 -0.2

Or see this region's nucleotide sequence