Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28425

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpth and ychH are separated by 277 nucleotidesychH and dauA are separated by 54 nucleotidesdauA and prs are separated by 151 nucleotides OKFHMN_28415: pth - aminoacyl-tRNA hydrolase, at 5,452,428 to 5,453,012 pth OKFHMN_28420: ychH - stress-induced protein YchH, at 5,453,290 to 5,453,568 ychH OKFHMN_28425: dauA - C4-dicarboxylic acid transporter DauA, at 5,453,623 to 5,455,275 dauA OKFHMN_28430: prs - ribose-phosphate diphosphokinase, at 5,455,427 to 5,456,440 prs Position (kb) 5453 5454 5455 5456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5453.038 kb on - strandat 5453.038 kb on - strandat 5453.238 kb on + strandat 5453.239 kb on - strandat 5453.289 kb on + strandat 5453.289 kb on + strandat 5453.348 kb on + strand, within ychHat 5453.573 kb on + strandat 5453.621 kb on - strandat 5454.232 kb on - strand, within dauAat 5454.340 kb on - strand, within dauAat 5455.116 kb on - strandat 5455.382 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,453,038 - +1.8
5,453,038 - -1.3
5,453,238 + +0.2
5,453,239 - +1.7
5,453,289 + -1.2
5,453,289 + -3.2
5,453,348 + ychH OKFHMN_28420 0.21 -0.2
5,453,573 + +1.0
5,453,621 - +0.4
5,454,232 - dauA OKFHMN_28425 0.37 -2.5
5,454,340 - dauA OKFHMN_28425 0.43 -2.0
5,455,116 - -0.4
5,455,382 - +1.5

Or see this region's nucleotide sequence