Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28270

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntumuC and dsbB are separated by 45 nucleotidesdsbB and nhaB are separated by 145 nucleotides OKFHMN_28265: umuC - DNA polymerase V catalytic protein, at 5,419,973 to 5,421,241 umuC OKFHMN_28270: dsbB - disulfide bond formation protein DsbB, at 5,421,287 to 5,421,817 dsbB OKFHMN_28275: nhaB - Na(+)/H(+) antiporter NhaB, at 5,421,963 to 5,423,504 nhaB Position (kb) 5421 5422Strain fitness (log2 ratio) -1 0 1at 5420.363 kb on - strand, within umuCat 5420.371 kb on + strand, within umuCat 5420.776 kb on + strand, within umuCat 5420.879 kb on + strand, within umuCat 5421.361 kb on - strand, within dsbBat 5421.583 kb on - strand, within dsbBat 5421.817 kb on + strandat 5421.943 kb on - strandat 5421.943 kb on - strandat 5421.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,420,363 - umuC OKFHMN_28265 0.31 +1.1
5,420,371 + umuC OKFHMN_28265 0.31 -0.4
5,420,776 + umuC OKFHMN_28265 0.63 -0.0
5,420,879 + umuC OKFHMN_28265 0.71 -1.4
5,421,361 - dsbB OKFHMN_28270 0.14 -1.7
5,421,583 - dsbB OKFHMN_28270 0.56 -1.0
5,421,817 + -0.4
5,421,943 - -0.1
5,421,943 - +1.6
5,421,943 - -0.1

Or see this region's nucleotide sequence