Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_28050 and OKFHMN_28055 are separated by 11 nucleotides OKFHMN_28055 and OKFHMN_28060 overlap by 4 nucleotides OKFHMN_28060 and OKFHMN_28065 are separated by 7 nucleotides OKFHMN_28065 and OKFHMN_28070 are separated by 15 nucleotides OKFHMN_28070 and OKFHMN_28075 overlap by 19 nucleotides OKFHMN_28075 and OKFHMN_28080 overlap by 8 nucleotides
OKFHMN_28050: OKFHMN_28050 - phage tail protein, at 5,384,805 to 5,385,158
_28050
OKFHMN_28055: OKFHMN_28055 - Tail completion protein Z, at 5,385,170 to 5,385,748
_28055
OKFHMN_28060: OKFHMN_28060 - Tail tube terminator protein, at 5,385,745 to 5,386,140
_28060
OKFHMN_28065: OKFHMN_28065 - Tail tube protein, at 5,386,148 to 5,386,888
_28065
OKFHMN_28070: OKFHMN_28070 - Phage minor tail protein, at 5,386,904 to 5,387,326
_28070
OKFHMN_28075: OKFHMN_28075 - phage tail assembly protein T, at 5,387,308 to 5,387,742
_28075
OKFHMN_28080: OKFHMN_28080 - phage tail tape measure protein, at 5,387,735 to 5,390,284
_28080
Position (kb) 5386
5387 Strain fitness (log2 ratio) -1
0
1 at 5385.169 kb on + strand at 5385.169 kb on + strand at 5385.169 kb on + strand at 5385.912 kb on + strand, within OKFHMN_28060 at 5386.384 kb on + strand, within OKFHMN_28065 at 5386.469 kb on + strand, within OKFHMN_28065 at 5387.234 kb on + strand, within OKFHMN_28070 at 5387.517 kb on + strand, within OKFHMN_28075 at 5387.690 kb on + strand, within OKFHMN_28075
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,385,169 + +0.5 5,385,169 + -0.8 5,385,169 + +0.3 5,385,912 + OKFHMN_28060 0.42 +0.6 5,386,384 + OKFHMN_28065 0.32 -1.4 5,386,469 + OKFHMN_28065 0.43 -0.8 5,387,234 + OKFHMN_28070 0.78 +0.4 5,387,517 + OKFHMN_28075 0.48 +0.9 5,387,690 + OKFHMN_28075 0.88 -0.2
Or see this region's nucleotide sequence