Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_27810 and OKFHMN_27815 are separated by 34 nucleotides OKFHMN_27815 and dnaQ are separated by 87 nucleotides dnaQ and OKFHMN_27825 are separated by 92 nucleotides OKFHMN_27825 and dicB overlap by 4 nucleotides dicB and OKFHMN_27840 are separated by 400 nucleotides
OKFHMN_27810: OKFHMN_27810 - Integrase, cryptic prophage CP-933P, at 5,356,070 to 5,356,225
_27810
OKFHMN_27815: OKFHMN_27815 - DNA-binding protein, at 5,356,260 to 5,356,496
_27815
OKFHMN_27820: dnaQ - exonuclease, at 5,356,584 to 5,359,055
dnaQ
OKFHMN_27825: OKFHMN_27825 - DUF1482 domain-containing protein, at 5,359,148 to 5,359,339
_27825
OKFHMN_27830: dicB - Division inhibition protein DicB, at 5,359,336 to 5,359,524
dicB
OKFHMN_27840: OKFHMN_27840 - hypothetical protein, at 5,359,925 to 5,360,089
_27840
Position (kb) 5356
5357
5358
5359
5360 Strain fitness (log2 ratio) -1
0
1 at 5355.985 kb on - strand at 5356.181 kb on - strand, within OKFHMN_27810 at 5356.359 kb on - strand, within OKFHMN_27815 at 5356.380 kb on - strand, within OKFHMN_27815 at 5356.555 kb on + strand at 5357.268 kb on - strand, within dnaQ at 5358.819 kb on - strand at 5358.821 kb on - strand at 5358.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,355,985 - +1.1 5,356,181 - OKFHMN_27810 0.71 -0.1 5,356,359 - OKFHMN_27815 0.42 -0.1 5,356,380 - OKFHMN_27815 0.51 -0.4 5,356,555 + -0.6 5,357,268 - dnaQ OKFHMN_27820 0.28 -0.2 5,358,819 - -0.9 5,358,821 - -0.2 5,358,821 - -0.5
Or see this region's nucleotide sequence