Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhR and Val_trna are separated by 107 nucleotides Val_trna and Val_trna are separated by 4 nucleotides Val_trna and ydhQ are separated by 307 nucleotides ydhQ and mdtK are separated by 40 nucleotides
OKFHMN_27335: ydhR - monooxygenase, at 5,263,704 to 5,264,009
ydhR
OKFHMN_27345: Val_trna - tRNA-Val(gac), at 5,264,117 to 5,264,193
_trna
OKFHMN_27350: Val_trna - tRNA-Val(gac), at 5,264,198 to 5,264,274
_trna
OKFHMN_27355: ydhQ - Uncharacterized protein YdhQ, at 5,264,582 to 5,265,838
ydhQ
OKFHMN_27360: mdtK - multidrug efflux MATE transporter MdtK, at 5,265,879 to 5,267,252
mdtK
Position (kb) 5264
5265
5266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5263.696 kb on - strand at 5263.940 kb on + strand, within ydhR at 5263.941 kb on - strand, within ydhR at 5263.977 kb on - strand, within ydhR at 5264.034 kb on + strand at 5264.062 kb on - strand at 5264.186 kb on - strand at 5264.186 kb on - strand at 5264.283 kb on - strand at 5264.283 kb on - strand at 5264.283 kb on - strand at 5264.283 kb on - strand at 5264.515 kb on + strand at 5264.515 kb on + strand at 5264.533 kb on + strand at 5264.539 kb on + strand at 5264.824 kb on + strand, within ydhQ at 5264.825 kb on - strand, within ydhQ at 5264.851 kb on + strand, within ydhQ at 5264.950 kb on + strand, within ydhQ at 5265.145 kb on + strand, within ydhQ at 5265.172 kb on + strand, within ydhQ at 5265.251 kb on + strand, within ydhQ at 5265.336 kb on + strand, within ydhQ at 5265.501 kb on + strand, within ydhQ at 5265.737 kb on - strand at 5265.936 kb on - strand at 5266.165 kb on - strand, within mdtK at 5266.357 kb on - strand, within mdtK at 5266.622 kb on - strand, within mdtK at 5266.652 kb on - strand, within mdtK
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,263,696 - +0.6 5,263,940 + ydhR OKFHMN_27335 0.77 +1.0 5,263,941 - ydhR OKFHMN_27335 0.77 +0.3 5,263,977 - ydhR OKFHMN_27335 0.89 -0.1 5,264,034 + +1.4 5,264,062 - +0.1 5,264,186 - +0.8 5,264,186 - +1.5 5,264,283 - +0.0 5,264,283 - +0.3 5,264,283 - -0.8 5,264,283 - -1.3 5,264,515 + +0.4 5,264,515 + -1.0 5,264,533 + +0.4 5,264,539 + -0.6 5,264,824 + ydhQ OKFHMN_27355 0.19 +0.2 5,264,825 - ydhQ OKFHMN_27355 0.19 +0.5 5,264,851 + ydhQ OKFHMN_27355 0.21 +0.3 5,264,950 + ydhQ OKFHMN_27355 0.29 -0.1 5,265,145 + ydhQ OKFHMN_27355 0.45 +2.0 5,265,172 + ydhQ OKFHMN_27355 0.47 +0.2 5,265,251 + ydhQ OKFHMN_27355 0.53 +0.5 5,265,336 + ydhQ OKFHMN_27355 0.60 +0.3 5,265,501 + ydhQ OKFHMN_27355 0.73 +0.1 5,265,737 - +0.1 5,265,936 - +0.6 5,266,165 - mdtK OKFHMN_27360 0.21 -2.1 5,266,357 - mdtK OKFHMN_27360 0.35 -1.6 5,266,622 - mdtK OKFHMN_27360 0.54 +0.0 5,266,652 - mdtK OKFHMN_27360 0.56 -0.5
Or see this region's nucleotide sequence