Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26915

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntastA and astD overlap by 4 nucleotidesastD and astB overlap by 4 nucleotides OKFHMN_26910: astA - arginine N-succinyltransferase, at 5,180,142 to 5,181,176 astA OKFHMN_26915: astD - succinylglutamate-semialdehyde dehydrogenase, at 5,181,173 to 5,182,651 astD OKFHMN_26920: astB - N-succinylarginine dihydrolase, at 5,182,648 to 5,183,991 astB Position (kb) 5181 5182 5183Strain fitness (log2 ratio) -1 0 1at 5180.451 kb on + strand, within astAat 5180.576 kb on + strand, within astAat 5180.606 kb on + strand, within astAat 5180.606 kb on + strand, within astAat 5180.655 kb on + strand, within astAat 5180.824 kb on + strand, within astAat 5180.824 kb on + strand, within astAat 5180.886 kb on + strand, within astAat 5180.887 kb on - strand, within astAat 5180.887 kb on - strand, within astAat 5180.951 kb on + strand, within astAat 5181.232 kb on + strandat 5181.604 kb on + strand, within astDat 5181.667 kb on + strand, within astDat 5182.916 kb on + strand, within astBat 5183.392 kb on - strand, within astBat 5183.466 kb on - strand, within astBat 5183.551 kb on - strand, within astBat 5183.551 kb on - strand, within astBat 5183.551 kb on - strand, within astBat 5183.554 kb on + strand, within astB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,180,451 + astA OKFHMN_26910 0.30 +0.9
5,180,576 + astA OKFHMN_26910 0.42 +1.5
5,180,606 + astA OKFHMN_26910 0.45 -0.8
5,180,606 + astA OKFHMN_26910 0.45 +1.3
5,180,655 + astA OKFHMN_26910 0.50 -1.6
5,180,824 + astA OKFHMN_26910 0.66 +0.9
5,180,824 + astA OKFHMN_26910 0.66 +0.6
5,180,886 + astA OKFHMN_26910 0.72 +0.8
5,180,887 - astA OKFHMN_26910 0.72 -0.6
5,180,887 - astA OKFHMN_26910 0.72 +0.1
5,180,951 + astA OKFHMN_26910 0.78 -1.1
5,181,232 + -0.7
5,181,604 + astD OKFHMN_26915 0.29 -0.9
5,181,667 + astD OKFHMN_26915 0.33 -1.6
5,182,916 + astB OKFHMN_26920 0.20 -0.3
5,183,392 - astB OKFHMN_26920 0.55 +0.9
5,183,466 - astB OKFHMN_26920 0.61 -0.2
5,183,551 - astB OKFHMN_26920 0.67 -0.1
5,183,551 - astB OKFHMN_26920 0.67 -0.8
5,183,551 - astB OKFHMN_26920 0.67 -1.5
5,183,554 + astB OKFHMN_26920 0.67 +0.6

Or see this region's nucleotide sequence