Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26860

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnudG and ynjF are separated by 86 nucleotidesynjF and ynjE are separated by 8 nucleotidesynjE and ynjD are separated by 66 nucleotidesynjD and ynjC overlap by 1 nucleotides OKFHMN_26850: nudG - CTP pyrophosphohydrolase, at 5,169,010 to 5,169,417 nudG OKFHMN_26855: ynjF - Inner membrane protein YnjF, at 5,169,504 to 5,170,124 ynjF OKFHMN_26860: ynjE - thiosulfate sulfurtransferase YnjE, at 5,170,133 to 5,171,440 ynjE OKFHMN_26865: ynjD - Uncharacterized ABC transporter ATP-binding protein YnjD, at 5,171,507 to 5,172,160 ynjD OKFHMN_26870: ynjC - Inner membrane ABC transporter permease protein YnjC, at 5,172,160 to 5,173,695 ynjC Position (kb) 5170 5171 5172Strain fitness (log2 ratio) -1 0 1 2 3at 5169.222 kb on - strand, within nudGat 5169.222 kb on - strand, within nudGat 5169.486 kb on + strandat 5169.488 kb on + strandat 5170.009 kb on + strand, within ynjFat 5170.251 kb on + strandat 5170.336 kb on + strand, within ynjEat 5170.458 kb on + strand, within ynjEat 5170.869 kb on + strand, within ynjEat 5170.906 kb on + strand, within ynjEat 5170.907 kb on - strand, within ynjEat 5171.074 kb on + strand, within ynjEat 5171.828 kb on - strand, within ynjDat 5171.828 kb on - strand, within ynjDat 5171.846 kb on - strand, within ynjDat 5172.086 kb on - strand, within ynjDat 5172.352 kb on - strand, within ynjCat 5172.354 kb on - strand, within ynjCat 5172.354 kb on - strand, within ynjCat 5172.364 kb on - strand, within ynjCat 5172.412 kb on - strand, within ynjC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,169,222 - nudG OKFHMN_26850 0.52 -0.7
5,169,222 - nudG OKFHMN_26850 0.52 -0.3
5,169,486 + -0.7
5,169,488 + +0.7
5,170,009 + ynjF OKFHMN_26855 0.81 +0.5
5,170,251 + -0.6
5,170,336 + ynjE OKFHMN_26860 0.16 -0.3
5,170,458 + ynjE OKFHMN_26860 0.25 -0.4
5,170,869 + ynjE OKFHMN_26860 0.56 -0.8
5,170,906 + ynjE OKFHMN_26860 0.59 +1.3
5,170,907 - ynjE OKFHMN_26860 0.59 -0.1
5,171,074 + ynjE OKFHMN_26860 0.72 -1.7
5,171,828 - ynjD OKFHMN_26865 0.49 +0.1
5,171,828 - ynjD OKFHMN_26865 0.49 -1.0
5,171,846 - ynjD OKFHMN_26865 0.52 +0.1
5,172,086 - ynjD OKFHMN_26865 0.89 -1.1
5,172,352 - ynjC OKFHMN_26870 0.12 -0.1
5,172,354 - ynjC OKFHMN_26870 0.13 +3.3
5,172,354 - ynjC OKFHMN_26870 0.13 -0.7
5,172,364 - ynjC OKFHMN_26870 0.13 +0.5
5,172,412 - ynjC OKFHMN_26870 0.16 -0.6

Or see this region's nucleotide sequence