Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26770

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjI and rbsK are separated by 4 nucleotidesrbsK and ydjG are separated by 9 nucleotidesydjG and ydjF are separated by 136 nucleotides OKFHMN_26760: ydjI - Uncharacterized protein YdjI, at 5,151,048 to 5,151,884 ydjI OKFHMN_26765: rbsK - sugar kinase, at 5,151,889 to 5,152,821 rbsK OKFHMN_26770: ydjG - NADH-dependent methylglyoxal reductase, at 5,152,831 to 5,153,811 ydjG OKFHMN_26775: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 5,153,948 to 5,154,706 ydjF Position (kb) 5152 5153 5154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5152.940 kb on + strand, within ydjGat 5153.028 kb on + strand, within ydjGat 5153.215 kb on + strand, within ydjGat 5153.260 kb on + strand, within ydjGat 5153.292 kb on + strand, within ydjGat 5153.809 kb on + strandat 5154.145 kb on + strand, within ydjFat 5154.155 kb on + strand, within ydjFat 5154.226 kb on + strand, within ydjFat 5154.253 kb on + strand, within ydjFat 5154.256 kb on + strand, within ydjFat 5154.381 kb on + strand, within ydjFat 5154.616 kb on + strand, within ydjFat 5154.625 kb on + strand, within ydjFat 5154.629 kb on + strand, within ydjFat 5154.633 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,152,940 + ydjG OKFHMN_26770 0.11 -0.2
5,153,028 + ydjG OKFHMN_26770 0.20 +0.7
5,153,215 + ydjG OKFHMN_26770 0.39 +1.0
5,153,260 + ydjG OKFHMN_26770 0.44 -0.2
5,153,292 + ydjG OKFHMN_26770 0.47 -0.6
5,153,809 + +0.4
5,154,145 + ydjF OKFHMN_26775 0.26 -0.1
5,154,155 + ydjF OKFHMN_26775 0.27 +0.2
5,154,226 + ydjF OKFHMN_26775 0.37 -0.2
5,154,253 + ydjF OKFHMN_26775 0.40 -3.0
5,154,256 + ydjF OKFHMN_26775 0.41 -2.1
5,154,381 + ydjF OKFHMN_26775 0.57 +0.3
5,154,616 + ydjF OKFHMN_26775 0.88 +0.2
5,154,625 + ydjF OKFHMN_26775 0.89 +0.5
5,154,629 + ydjF OKFHMN_26775 0.90 +1.9
5,154,633 + -1.2

Or see this region's nucleotide sequence