Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msrC and proQ are separated by 96 nucleotides proQ and prc are separated by 19 nucleotides prc and htpX are separated by 191 nucleotides
OKFHMN_26455: msrC - L-methionine (R)-S-oxide reductase, at 5,092,407 to 5,092,958
msrC
OKFHMN_26460: proQ - RNA chaperone ProQ, at 5,093,055 to 5,093,753
proQ
OKFHMN_26465: prc - carboxy terminal-processing peptidase, at 5,093,773 to 5,095,821
prc
OKFHMN_26470: htpX - protease HtpX, at 5,096,013 to 5,096,894
htpX
Position (kb) 5093
5094
5095
5096 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5092.814 kb on + strand, within msrC at 5092.972 kb on + strand at 5093.040 kb on + strand at 5093.069 kb on + strand at 5093.069 kb on + strand at 5093.078 kb on + strand at 5093.078 kb on + strand at 5093.092 kb on + strand at 5093.092 kb on + strand at 5093.224 kb on + strand, within proQ at 5093.341 kb on + strand, within proQ at 5094.208 kb on + strand, within prc at 5094.208 kb on + strand, within prc at 5094.210 kb on + strand, within prc at 5094.210 kb on + strand, within prc at 5094.211 kb on - strand, within prc at 5094.211 kb on - strand, within prc at 5094.355 kb on + strand, within prc at 5094.544 kb on + strand, within prc at 5094.783 kb on + strand, within prc at 5094.783 kb on + strand, within prc at 5094.783 kb on + strand, within prc at 5094.855 kb on + strand, within prc at 5095.017 kb on + strand, within prc at 5095.035 kb on + strand, within prc at 5095.162 kb on + strand, within prc at 5095.253 kb on + strand, within prc at 5095.253 kb on + strand, within prc at 5095.463 kb on + strand, within prc at 5095.819 kb on + strand at 5095.819 kb on + strand at 5095.876 kb on + strand at 5095.888 kb on + strand at 5095.922 kb on - strand at 5096.257 kb on + strand, within htpX at 5096.307 kb on + strand, within htpX at 5096.307 kb on + strand, within htpX
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,092,814 + msrC OKFHMN_26455 0.74 -0.1 5,092,972 + -0.5 5,093,040 + -0.6 5,093,069 + -1.6 5,093,069 + -3.3 5,093,078 + -0.4 5,093,078 + -2.8 5,093,092 + -3.8 5,093,092 + -3.2 5,093,224 + proQ OKFHMN_26460 0.24 -1.0 5,093,341 + proQ OKFHMN_26460 0.41 -1.3 5,094,208 + prc OKFHMN_26465 0.21 -1.0 5,094,208 + prc OKFHMN_26465 0.21 -0.1 5,094,210 + prc OKFHMN_26465 0.21 -1.7 5,094,210 + prc OKFHMN_26465 0.21 -0.5 5,094,211 - prc OKFHMN_26465 0.21 -0.4 5,094,211 - prc OKFHMN_26465 0.21 -3.4 5,094,355 + prc OKFHMN_26465 0.28 -0.6 5,094,544 + prc OKFHMN_26465 0.38 -0.9 5,094,783 + prc OKFHMN_26465 0.49 -2.5 5,094,783 + prc OKFHMN_26465 0.49 -3.0 5,094,783 + prc OKFHMN_26465 0.49 -1.1 5,094,855 + prc OKFHMN_26465 0.53 -0.5 5,095,017 + prc OKFHMN_26465 0.61 -2.0 5,095,035 + prc OKFHMN_26465 0.62 -0.7 5,095,162 + prc OKFHMN_26465 0.68 +0.7 5,095,253 + prc OKFHMN_26465 0.72 -1.0 5,095,253 + prc OKFHMN_26465 0.72 -0.4 5,095,463 + prc OKFHMN_26465 0.82 -0.9 5,095,819 + -0.7 5,095,819 + -0.2 5,095,876 + +0.9 5,095,888 + +0.4 5,095,922 - +0.6 5,096,257 + htpX OKFHMN_26470 0.28 -0.1 5,096,307 + htpX OKFHMN_26470 0.33 +1.2 5,096,307 + htpX OKFHMN_26470 0.33 -0.5
Or see this region's nucleotide sequence