Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26300

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntznuB and znuC overlap by 4 nucleotidesznuC and znuA are separated by 24 nucleotides OKFHMN_26295: znuB - zinc ABC transporter permease subunit ZnuB, at 5,064,389 to 5,065,174 znuB OKFHMN_26300: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 5,065,171 to 5,065,926 znuC OKFHMN_26305: znuA - zinc ABC transporter substrate-binding protein ZnuA, at 5,065,951 to 5,066,937 znuA Position (kb) 5065 5066Strain fitness (log2 ratio) -2 -1 0 1at 5064.220 kb on - strandat 5064.221 kb on + strandat 5064.337 kb on + strandat 5064.391 kb on - strandat 5064.426 kb on - strandat 5064.599 kb on - strand, within znuBat 5064.911 kb on - strand, within znuBat 5065.098 kb on - strandat 5065.231 kb on - strandat 5065.231 kb on - strandat 5065.245 kb on - strandat 5065.245 kb on - strandat 5065.449 kb on - strand, within znuCat 5065.451 kb on - strand, within znuCat 5065.451 kb on - strand, within znuCat 5066.234 kb on + strand, within znuAat 5066.235 kb on - strand, within znuAat 5066.355 kb on + strand, within znuAat 5066.355 kb on + strand, within znuAat 5066.453 kb on + strand, within znuAat 5066.632 kb on + strand, within znuAat 5066.856 kb on + strandat 5066.868 kb on + strandat 5066.878 kb on + strandat 5066.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,064,220 - +0.5
5,064,221 + +1.0
5,064,337 + -1.3
5,064,391 - -0.4
5,064,426 - -0.2
5,064,599 - znuB OKFHMN_26295 0.27 -1.0
5,064,911 - znuB OKFHMN_26295 0.66 -0.3
5,065,098 - -1.4
5,065,231 - -0.4
5,065,231 - -0.2
5,065,245 - +0.3
5,065,245 - +0.5
5,065,449 - znuC OKFHMN_26300 0.37 -1.1
5,065,451 - znuC OKFHMN_26300 0.37 -1.7
5,065,451 - znuC OKFHMN_26300 0.37 -0.4
5,066,234 + znuA OKFHMN_26305 0.29 -1.7
5,066,235 - znuA OKFHMN_26305 0.29 -0.4
5,066,355 + znuA OKFHMN_26305 0.41 -1.7
5,066,355 + znuA OKFHMN_26305 0.41 -0.4
5,066,453 + znuA OKFHMN_26305 0.51 -1.9
5,066,632 + znuA OKFHMN_26305 0.69 -0.5
5,066,856 + +0.3
5,066,868 + +0.7
5,066,878 + -0.3
5,066,878 + -0.1

Or see this region's nucleotide sequence