Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26220

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttorZ and cmoB are separated by 164 nucleotidescmoB and cmoA overlap by 4 nucleotidescmoA and yecN are separated by 40 nucleotides OKFHMN_26210: torZ - trimethylamine N-oxide reductase TorZ, at 5,051,482 to 5,053,911 torZ OKFHMN_26220: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 5,054,076 to 5,055,047 cmoB OKFHMN_26225: cmoA - carboxy-S-adenosyl-L-methionine synthase CmoA, at 5,055,044 to 5,055,787 cmoA OKFHMN_26230: yecN - Inner membrane protein YecN, at 5,055,828 to 5,056,223 yecN Position (kb) 5054 5055 5056Strain fitness (log2 ratio) -2 -1 0 1 2at 5053.524 kb on - strand, within torZat 5053.712 kb on + strandat 5053.843 kb on + strandat 5053.909 kb on + strandat 5053.975 kb on - strandat 5054.016 kb on - strandat 5054.245 kb on - strand, within cmoBat 5054.759 kb on - strand, within cmoBat 5054.930 kb on + strand, within cmoBat 5055.437 kb on - strand, within cmoAat 5055.456 kb on - strand, within cmoAat 5055.545 kb on - strand, within cmoAat 5055.545 kb on - strand, within cmoAat 5055.647 kb on - strand, within cmoAat 5055.647 kb on - strand, within cmoAat 5055.861 kb on - strandat 5055.863 kb on - strandat 5055.999 kb on - strand, within yecN

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,053,524 - torZ OKFHMN_26210 0.84 -0.7
5,053,712 + +0.6
5,053,843 + +0.3
5,053,909 + -1.1
5,053,975 - +1.4
5,054,016 - -0.2
5,054,245 - cmoB OKFHMN_26220 0.17 -0.4
5,054,759 - cmoB OKFHMN_26220 0.70 +2.4
5,054,930 + cmoB OKFHMN_26220 0.88 +0.2
5,055,437 - cmoA OKFHMN_26225 0.53 +1.4
5,055,456 - cmoA OKFHMN_26225 0.55 +0.7
5,055,545 - cmoA OKFHMN_26225 0.67 -2.7
5,055,545 - cmoA OKFHMN_26225 0.67 +0.9
5,055,647 - cmoA OKFHMN_26225 0.81 +0.4
5,055,647 - cmoA OKFHMN_26225 0.81 -0.1
5,055,861 - -0.5
5,055,863 - -1.7
5,055,999 - yecN OKFHMN_26230 0.43 +2.1

Or see this region's nucleotide sequence