Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25555

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzinT and msrQ are separated by 235 nucleotidesmsrQ and msrP are separated by 0 nucleotidesmsrP and hiuH are separated by 107 nucleotideshiuH and hprR are separated by 21 nucleotides OKFHMN_25545: zinT - metal-binding protein ZinT, at 4,944,566 to 4,945,237 zinT OKFHMN_25550: msrQ - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 4,945,473 to 4,946,108 msrQ OKFHMN_25555: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,946,109 to 4,947,113 msrP OKFHMN_25560: hiuH - hydroxyisourate hydrolase, at 4,947,221 to 4,947,634 hiuH OKFHMN_25565: hprR - response regulator transcription factor HprR, at 4,947,656 to 4,948,438 hprR Position (kb) 4946 4947 4948Strain fitness (log2 ratio) -3 -2 -1 0 1at 4945.388 kb on + strandat 4945.477 kb on - strandat 4945.477 kb on - strandat 4945.574 kb on - strand, within msrQat 4946.171 kb on + strandat 4946.349 kb on - strand, within msrPat 4946.510 kb on - strand, within msrPat 4946.567 kb on - strand, within msrPat 4946.588 kb on - strand, within msrPat 4946.867 kb on + strand, within msrPat 4946.868 kb on - strand, within msrPat 4947.078 kb on - strandat 4947.190 kb on + strandat 4947.261 kb on - strandat 4947.392 kb on - strand, within hiuHat 4947.621 kb on + strandat 4947.697 kb on - strandat 4947.707 kb on + strandat 4947.919 kb on + strand, within hprR

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,945,388 + -0.3
4,945,477 - -0.4
4,945,477 - -0.5
4,945,574 - msrQ OKFHMN_25550 0.16 -1.6
4,946,171 + +0.1
4,946,349 - msrP OKFHMN_25555 0.24 +0.6
4,946,510 - msrP OKFHMN_25555 0.40 +0.4
4,946,567 - msrP OKFHMN_25555 0.46 -3.2
4,946,588 - msrP OKFHMN_25555 0.48 +0.1
4,946,867 + msrP OKFHMN_25555 0.75 -1.9
4,946,868 - msrP OKFHMN_25555 0.76 -0.1
4,947,078 - -2.0
4,947,190 + -0.5
4,947,261 - -0.1
4,947,392 - hiuH OKFHMN_25560 0.41 -0.6
4,947,621 + +0.9
4,947,697 - +0.1
4,947,707 + +0.9
4,947,919 + hprR OKFHMN_25565 0.34 +0.1

Or see this region's nucleotide sequence