Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25535

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespJ and OKFHMN_25530 are separated by 207 nucleotidesOKFHMN_25530 and OKFHMN_25535 are separated by 50 nucleotidesOKFHMN_25535 and yodB are separated by 570 nucleotides OKFHMN_25525: espJ - type III secretion system effector ADP-ribosyltransferase EspJ, at 4,941,903 to 4,942,556 espJ OKFHMN_25530: OKFHMN_25530 - hypothetical protein, at 4,942,764 to 4,942,982 _25530 OKFHMN_25535: OKFHMN_25535 - tRNA-Xxx, at 4,943,033 to 4,943,122 _25535 OKFHMN_25540: yodB - Cytochrome b561-like protein, at 4,943,693 to 4,944,223 yodB Position (kb) 4943 4944Strain fitness (log2 ratio) -1 0 1at 4942.609 kb on - strandat 4942.721 kb on + strandat 4942.809 kb on + strand, within OKFHMN_25530at 4942.834 kb on + strand, within OKFHMN_25530at 4943.031 kb on + strandat 4943.729 kb on - strandat 4943.950 kb on - strand, within yodBat 4944.112 kb on + strand, within yodBat 4944.113 kb on - strand, within yodB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,942,609 - -0.3
4,942,721 + -0.3
4,942,809 + OKFHMN_25530 0.21 -0.6
4,942,834 + OKFHMN_25530 0.32 +0.7
4,943,031 + -1.1
4,943,729 - +0.5
4,943,950 - yodB OKFHMN_25540 0.48 +1.5
4,944,112 + yodB OKFHMN_25540 0.79 +1.0
4,944,113 - yodB OKFHMN_25540 0.79 -0.5

Or see this region's nucleotide sequence