Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25165

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcbl and Asn_trna are separated by 37 nucleotidesAsn_trna and yeeO are separated by 193 nucleotidesyeeO and Asn_trna are separated by 100 nucleotidesAsn_trna and ycdB are separated by 449 nucleotides OKFHMN_25155: cbl - HTH-type transcriptional regulator Cbl, at 4,880,743 to 4,881,693 cbl OKFHMN_25160: Asn_trna - tRNA-Asn(gtt), at 4,881,731 to 4,881,806 _trna OKFHMN_25165: yeeO - toxic metabolite efflux MATE transporter YeeO, at 4,882,000 to 4,883,454 yeeO OKFHMN_25170: Asn_trna - tRNA-Asn(gtt), at 4,883,555 to 4,883,630 _trna OKFHMN_25175: ycdB - putative transcriptional regulatory protein YcdB, at 4,884,080 to 4,884,796 ycdB Position (kb) 4881 4882 4883 4884Strain fitness (log2 ratio) -2 -1 0 1 2at 4881.012 kb on + strand, within cblat 4881.061 kb on - strand, within cblat 4881.286 kb on - strand, within cblat 4881.403 kb on - strand, within cblat 4881.404 kb on + strand, within cblat 4881.404 kb on + strand, within cblat 4881.405 kb on - strand, within cblat 4881.439 kb on + strand, within cblat 4881.544 kb on - strand, within cblat 4881.586 kb on - strand, within cblat 4881.589 kb on + strand, within cblat 4881.691 kb on + strandat 4881.709 kb on - strandat 4881.709 kb on - strandat 4882.066 kb on + strandat 4882.264 kb on - strand, within yeeOat 4882.541 kb on + strand, within yeeOat 4882.548 kb on - strand, within yeeOat 4882.575 kb on + strand, within yeeOat 4882.582 kb on - strand, within yeeOat 4882.794 kb on + strand, within yeeOat 4883.098 kb on + strand, within yeeOat 4883.160 kb on + strand, within yeeOat 4883.160 kb on + strand, within yeeOat 4883.229 kb on + strand, within yeeOat 4883.230 kb on - strand, within yeeOat 4883.242 kb on - strand, within yeeOat 4883.452 kb on + strandat 4884.410 kb on - strand, within ycdB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,881,012 + cbl OKFHMN_25155 0.28 +1.2
4,881,061 - cbl OKFHMN_25155 0.33 -0.1
4,881,286 - cbl OKFHMN_25155 0.57 -0.0
4,881,403 - cbl OKFHMN_25155 0.69 +0.2
4,881,404 + cbl OKFHMN_25155 0.70 +0.7
4,881,404 + cbl OKFHMN_25155 0.70 -0.9
4,881,405 - cbl OKFHMN_25155 0.70 +1.1
4,881,439 + cbl OKFHMN_25155 0.73 -1.6
4,881,544 - cbl OKFHMN_25155 0.84 +0.7
4,881,586 - cbl OKFHMN_25155 0.89 +1.5
4,881,589 + cbl OKFHMN_25155 0.89 +1.1
4,881,691 + +0.2
4,881,709 - -0.3
4,881,709 - -0.2
4,882,066 + -0.7
4,882,264 - yeeO OKFHMN_25165 0.18 -0.1
4,882,541 + yeeO OKFHMN_25165 0.37 +2.5
4,882,548 - yeeO OKFHMN_25165 0.38 +0.8
4,882,575 + yeeO OKFHMN_25165 0.40 -0.3
4,882,582 - yeeO OKFHMN_25165 0.40 -2.1
4,882,794 + yeeO OKFHMN_25165 0.55 -0.1
4,883,098 + yeeO OKFHMN_25165 0.75 -0.1
4,883,160 + yeeO OKFHMN_25165 0.80 +1.0
4,883,160 + yeeO OKFHMN_25165 0.80 -1.8
4,883,229 + yeeO OKFHMN_25165 0.84 -0.1
4,883,230 - yeeO OKFHMN_25165 0.85 -0.9
4,883,242 - yeeO OKFHMN_25165 0.85 +0.1
4,883,452 + -0.6
4,884,410 - ycdB OKFHMN_25175 0.46 +0.9

Or see this region's nucleotide sequence