Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24520

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisD and hisG are separated by 5 nucleotideshisG and hisL are separated by 145 nucleotideshisL and yeeZ are separated by 425 nucleotides OKFHMN_24515: hisD - Histidinol dehydrogenase, at 4,791,328 to 4,792,632 hisD OKFHMN_24520: hisG - ATP phosphoribosyltransferase, at 4,792,638 to 4,793,537 hisG OKFHMN_24525: hisL - his operon leader peptide, at 4,793,683 to 4,793,733 hisL OKFHMN_24530: yeeZ - Protein YeeZ, at 4,794,159 to 4,794,983 yeeZ Position (kb) 4792 4793 4794Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4791.766 kb on + strand, within hisDat 4792.244 kb on + strand, within hisDat 4792.306 kb on + strand, within hisDat 4792.312 kb on + strand, within hisDat 4792.471 kb on - strand, within hisDat 4792.570 kb on + strandat 4792.597 kb on - strandat 4792.603 kb on - strandat 4792.856 kb on - strand, within hisGat 4792.977 kb on - strand, within hisGat 4793.125 kb on + strand, within hisGat 4793.261 kb on - strand, within hisGat 4793.488 kb on - strandat 4793.508 kb on - strandat 4793.685 kb on - strandat 4793.685 kb on - strandat 4793.685 kb on - strandat 4793.889 kb on + strandat 4793.901 kb on + strandat 4793.910 kb on - strandat 4793.940 kb on + strandat 4794.112 kb on + strandat 4794.129 kb on - strandat 4794.130 kb on + strandat 4794.130 kb on + strandat 4794.136 kb on + strandat 4794.137 kb on - strandat 4794.153 kb on + strandat 4794.300 kb on + strand, within yeeZat 4794.424 kb on + strand, within yeeZ

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,791,766 + hisD OKFHMN_24515 0.34 -4.5
4,792,244 + hisD OKFHMN_24515 0.70 -4.1
4,792,306 + hisD OKFHMN_24515 0.75 -1.7
4,792,312 + hisD OKFHMN_24515 0.75 -4.2
4,792,471 - hisD OKFHMN_24515 0.88 -2.2
4,792,570 + -3.6
4,792,597 - -3.7
4,792,603 - -4.0
4,792,856 - hisG OKFHMN_24520 0.24 -2.3
4,792,977 - hisG OKFHMN_24520 0.38 -4.1
4,793,125 + hisG OKFHMN_24520 0.54 -2.2
4,793,261 - hisG OKFHMN_24520 0.69 -3.5
4,793,488 - -1.9
4,793,508 - -2.7
4,793,685 - -1.4
4,793,685 - +0.0
4,793,685 - +1.2
4,793,889 + +0.5
4,793,901 + -0.1
4,793,910 - +0.9
4,793,940 + +0.6
4,794,112 + -0.3
4,794,129 - +3.5
4,794,130 + +0.4
4,794,130 + +1.2
4,794,136 + +0.8
4,794,137 - +0.0
4,794,153 + +0.0
4,794,300 + yeeZ OKFHMN_24530 0.17 -0.2
4,794,424 + yeeZ OKFHMN_24530 0.32 -0.5

Or see this region's nucleotide sequence