Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24255

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegD and alkA are separated by 181 nucleotidesalkA and mASE1 are separated by 100 nucleotides OKFHMN_24250: yegD - molecular chaperone, at 4,730,928 to 4,732,232 yegD OKFHMN_24255: alkA - DNA-3-methyladenine glycosylase 2, at 4,732,414 to 4,733,262 alkA OKFHMN_24260: mASE1 - diguanylate cyclase, at 4,733,363 to 4,736,170 mASE1 Position (kb) 4732 4733 4734Strain fitness (log2 ratio) -1 0 1 2at 4731.474 kb on - strand, within yegDat 4731.667 kb on - strand, within yegDat 4731.928 kb on - strand, within yegDat 4732.064 kb on - strand, within yegDat 4732.286 kb on - strandat 4732.286 kb on - strandat 4732.419 kb on + strandat 4732.584 kb on + strand, within alkAat 4732.595 kb on + strand, within alkAat 4732.867 kb on + strand, within alkAat 4732.867 kb on + strand, within alkAat 4732.868 kb on - strand, within alkAat 4733.128 kb on + strand, within alkAat 4733.224 kb on - strandat 4733.312 kb on - strandat 4733.387 kb on - strandat 4733.566 kb on + strandat 4733.585 kb on + strandat 4733.586 kb on - strandat 4733.607 kb on + strandat 4733.751 kb on - strand, within mASE1at 4733.753 kb on + strand, within mASE1at 4733.852 kb on + strand, within mASE1at 4733.904 kb on - strand, within mASE1at 4733.999 kb on - strand, within mASE1at 4734.154 kb on - strand, within mASE1at 4734.193 kb on - strand, within mASE1

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,731,474 - yegD OKFHMN_24250 0.42 +0.4
4,731,667 - yegD OKFHMN_24250 0.57 -0.6
4,731,928 - yegD OKFHMN_24250 0.77 +0.2
4,732,064 - yegD OKFHMN_24250 0.87 -1.0
4,732,286 - -0.2
4,732,286 - +0.4
4,732,419 + +0.3
4,732,584 + alkA OKFHMN_24255 0.20 +0.3
4,732,595 + alkA OKFHMN_24255 0.21 -0.3
4,732,867 + alkA OKFHMN_24255 0.53 -1.2
4,732,867 + alkA OKFHMN_24255 0.53 +0.5
4,732,868 - alkA OKFHMN_24255 0.53 -0.7
4,733,128 + alkA OKFHMN_24255 0.84 +1.1
4,733,224 - -0.3
4,733,312 - +0.6
4,733,387 - -0.4
4,733,566 + +1.8
4,733,585 + -0.5
4,733,586 - +0.4
4,733,607 + +0.2
4,733,751 - mASE1 OKFHMN_24260 0.14 -0.5
4,733,753 + mASE1 OKFHMN_24260 0.14 -0.8
4,733,852 + mASE1 OKFHMN_24260 0.17 +0.1
4,733,904 - mASE1 OKFHMN_24260 0.19 +0.3
4,733,999 - mASE1 OKFHMN_24260 0.23 +0.5
4,734,154 - mASE1 OKFHMN_24260 0.28 +0.7
4,734,193 - mASE1 OKFHMN_24260 0.30 +0.4

Or see this region's nucleotide sequence