Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24175

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegQ and yegP are separated by 147 nucleotidesyegP and baeR are separated by 190 nucleotidesbaeR and baeS overlap by 4 nucleotides OKFHMN_24165: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 4,713,331 to 4,714,692 yegQ OKFHMN_24170: yegP - UPF0339 protein YegP, at 4,714,840 to 4,715,172 yegP OKFHMN_24175: baeR - two-component system response regulator BaeR, at 4,715,363 to 4,716,085 baeR OKFHMN_24180: baeS - two-component system sensor histidine kinase BaeS, at 4,716,082 to 4,717,485 baeS Position (kb) 4715 4716 4717Strain fitness (log2 ratio) -2 -1 0 1 2at 4714.389 kb on + strand, within yegQat 4714.410 kb on + strand, within yegQat 4714.410 kb on + strand, within yegQat 4714.692 kb on + strandat 4714.838 kb on - strandat 4714.923 kb on - strand, within yegPat 4715.031 kb on + strand, within yegPat 4715.073 kb on + strand, within yegPat 4715.073 kb on + strand, within yegPat 4715.076 kb on - strand, within yegPat 4715.076 kb on - strand, within yegPat 4715.213 kb on + strandat 4715.214 kb on - strandat 4715.349 kb on + strandat 4715.350 kb on - strandat 4715.940 kb on + strand, within baeRat 4715.941 kb on - strand, within baeRat 4716.050 kb on - strandat 4716.086 kb on - strandat 4716.126 kb on + strandat 4716.174 kb on + strandat 4717.018 kb on - strand, within baeS

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,714,389 + yegQ OKFHMN_24165 0.78 +0.2
4,714,410 + yegQ OKFHMN_24165 0.79 +1.9
4,714,410 + yegQ OKFHMN_24165 0.79 -0.1
4,714,692 + -0.1
4,714,838 - +1.0
4,714,923 - yegP OKFHMN_24170 0.25 -0.7
4,715,031 + yegP OKFHMN_24170 0.57 -0.3
4,715,073 + yegP OKFHMN_24170 0.70 +0.4
4,715,073 + yegP OKFHMN_24170 0.70 +0.5
4,715,076 - yegP OKFHMN_24170 0.71 -1.5
4,715,076 - yegP OKFHMN_24170 0.71 +1.1
4,715,213 + +0.2
4,715,214 - +0.5
4,715,349 + -0.2
4,715,350 - +0.0
4,715,940 + baeR OKFHMN_24175 0.80 -0.1
4,715,941 - baeR OKFHMN_24175 0.80 +1.0
4,716,050 - -0.8
4,716,086 - -0.4
4,716,126 + +1.1
4,716,174 + -1.8
4,717,018 - baeS OKFHMN_24180 0.67 +0.6

Or see this region's nucleotide sequence