Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycgM and maiA are separated by 8 nucleotides maiA and ubiH are separated by 14 nucleotides ubiH and dusC are separated by 159 nucleotides
OKFHMN_23600: ycgM - 5-carboxymethyl-2-hydroxymuconate isomerase, at 4,611,318 to 4,612,019
ycgM
OKFHMN_23605: maiA - maleylacetoacetate isomerase, at 4,612,028 to 4,612,672
maiA
OKFHMN_23610: ubiH - 3-hydroxybenzoate 6-monooxygenase, at 4,612,687 to 4,613,880
ubiH
OKFHMN_23615: dusC - tRNA dihydrouridine(16) synthase DusC, at 4,614,040 to 4,614,990
dusC
Position (kb) 4612
4613
4614 Strain fitness (log2 ratio) -2
-1
0
1 at 4611.805 kb on + strand, within ycgM at 4611.805 kb on + strand, within ycgM at 4611.879 kb on + strand, within ycgM at 4612.052 kb on - strand at 4612.103 kb on + strand, within maiA at 4612.123 kb on + strand, within maiA at 4612.124 kb on - strand, within maiA at 4612.257 kb on - strand, within maiA at 4612.658 kb on - strand at 4612.683 kb on + strand at 4612.683 kb on + strand at 4612.683 kb on + strand at 4612.684 kb on - strand at 4612.684 kb on - strand at 4612.686 kb on - strand at 4612.709 kb on + strand at 4612.912 kb on - strand, within ubiH at 4612.912 kb on - strand, within ubiH at 4612.994 kb on - strand, within ubiH at 4613.201 kb on + strand, within ubiH at 4613.239 kb on + strand, within ubiH at 4613.357 kb on - strand, within ubiH at 4613.370 kb on - strand, within ubiH at 4613.370 kb on - strand, within ubiH at 4613.415 kb on + strand, within ubiH at 4613.415 kb on + strand, within ubiH at 4613.416 kb on - strand, within ubiH at 4613.418 kb on + strand, within ubiH at 4613.437 kb on + strand, within ubiH at 4613.587 kb on + strand, within ubiH at 4613.588 kb on - strand, within ubiH at 4613.589 kb on + strand, within ubiH at 4613.590 kb on - strand, within ubiH at 4613.628 kb on - strand, within ubiH at 4613.686 kb on + strand, within ubiH at 4613.781 kb on - strand at 4613.784 kb on + strand at 4613.784 kb on + strand at 4613.785 kb on - strand at 4613.785 kb on - strand at 4613.843 kb on - strand at 4613.950 kb on - strand at 4613.975 kb on - strand at 4614.012 kb on - strand at 4614.012 kb on - strand at 4614.012 kb on - strand at 4614.397 kb on + strand, within dusC at 4614.726 kb on + strand, within dusC at 4614.754 kb on + strand, within dusC at 4614.756 kb on + strand, within dusC at 4614.858 kb on + strand, within dusC
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,611,805 + ycgM OKFHMN_23600 0.69 +0.5 4,611,805 + ycgM OKFHMN_23600 0.69 -0.1 4,611,879 + ycgM OKFHMN_23600 0.80 -0.1 4,612,052 - -0.5 4,612,103 + maiA OKFHMN_23605 0.12 -0.2 4,612,123 + maiA OKFHMN_23605 0.15 -0.1 4,612,124 - maiA OKFHMN_23605 0.15 +0.5 4,612,257 - maiA OKFHMN_23605 0.36 -1.1 4,612,658 - +0.6 4,612,683 + +1.1 4,612,683 + +0.8 4,612,683 + +0.4 4,612,684 - -0.2 4,612,684 - +0.7 4,612,686 - +0.6 4,612,709 + -0.8 4,612,912 - ubiH OKFHMN_23610 0.19 -0.3 4,612,912 - ubiH OKFHMN_23610 0.19 -0.8 4,612,994 - ubiH OKFHMN_23610 0.26 +1.5 4,613,201 + ubiH OKFHMN_23610 0.43 +0.3 4,613,239 + ubiH OKFHMN_23610 0.46 +0.1 4,613,357 - ubiH OKFHMN_23610 0.56 +1.1 4,613,370 - ubiH OKFHMN_23610 0.57 -1.1 4,613,370 - ubiH OKFHMN_23610 0.57 -0.3 4,613,415 + ubiH OKFHMN_23610 0.61 -0.7 4,613,415 + ubiH OKFHMN_23610 0.61 -1.5 4,613,416 - ubiH OKFHMN_23610 0.61 -0.4 4,613,418 + ubiH OKFHMN_23610 0.61 -0.3 4,613,437 + ubiH OKFHMN_23610 0.63 -0.4 4,613,587 + ubiH OKFHMN_23610 0.75 -0.2 4,613,588 - ubiH OKFHMN_23610 0.75 +0.7 4,613,589 + ubiH OKFHMN_23610 0.76 +0.4 4,613,590 - ubiH OKFHMN_23610 0.76 +0.8 4,613,628 - ubiH OKFHMN_23610 0.79 +0.0 4,613,686 + ubiH OKFHMN_23610 0.84 -1.2 4,613,781 - -0.2 4,613,784 + -0.0 4,613,784 + +0.5 4,613,785 - +0.8 4,613,785 - -0.2 4,613,843 - -1.5 4,613,950 - +0.6 4,613,975 - -1.1 4,614,012 - +0.9 4,614,012 - -0.9 4,614,012 - +0.4 4,614,397 + dusC OKFHMN_23615 0.38 -2.1 4,614,726 + dusC OKFHMN_23615 0.72 +0.2 4,614,754 + dusC OKFHMN_23615 0.75 +0.2 4,614,756 + dusC OKFHMN_23615 0.75 -0.6 4,614,858 + dusC OKFHMN_23615 0.86 -0.2
Or see this region's nucleotide sequence