Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23530

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalS and mglB are separated by 278 nucleotidesmglB and mglA are separated by 60 nucleotides OKFHMN_23525: galS - HTH-type transcriptional regulator GalS, at 4,596,696 to 4,597,736 galS OKFHMN_23530: mglB - galactose/glucose ABC transporter substrate-binding protein MglB, at 4,598,015 to 4,599,013 mglB OKFHMN_23535: mglA - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 4,599,074 to 4,600,594 mglA Position (kb) 4598 4599 4600Strain fitness (log2 ratio) -1 0 1at 4597.044 kb on - strand, within galSat 4597.123 kb on + strand, within galSat 4597.278 kb on - strand, within galSat 4597.426 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.517 kb on + strand, within galSat 4597.712 kb on + strandat 4597.787 kb on - strandat 4597.859 kb on + strandat 4597.870 kb on - strandat 4597.956 kb on - strandat 4598.011 kb on + strandat 4598.020 kb on + strandat 4598.113 kb on + strandat 4598.113 kb on + strandat 4598.117 kb on + strand, within mglBat 4598.118 kb on - strand, within mglBat 4598.131 kb on + strand, within mglBat 4598.131 kb on + strand, within mglBat 4598.131 kb on + strand, within mglBat 4598.132 kb on - strand, within mglBat 4598.244 kb on + strand, within mglBat 4598.244 kb on + strand, within mglBat 4598.245 kb on - strand, within mglBat 4598.353 kb on + strand, within mglBat 4598.857 kb on + strand, within mglBat 4598.976 kb on + strandat 4599.074 kb on - strandat 4599.108 kb on - strandat 4599.151 kb on + strandat 4599.685 kb on + strand, within mglAat 4599.685 kb on + strand, within mglAat 4599.877 kb on - strand, within mglAat 4599.880 kb on + strand, within mglA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,597,044 - galS OKFHMN_23525 0.33 +0.8
4,597,123 + galS OKFHMN_23525 0.41 +0.5
4,597,278 - galS OKFHMN_23525 0.56 -0.9
4,597,426 - galS OKFHMN_23525 0.70 +0.2
4,597,463 - galS OKFHMN_23525 0.74 +0.0
4,597,463 - galS OKFHMN_23525 0.74 +0.3
4,597,463 - galS OKFHMN_23525 0.74 +0.2
4,597,517 + galS OKFHMN_23525 0.79 -0.3
4,597,712 + +0.6
4,597,787 - +0.5
4,597,859 + -0.7
4,597,870 - +0.6
4,597,956 - +1.4
4,598,011 + -0.6
4,598,020 + -0.2
4,598,113 + +1.2
4,598,113 + -0.0
4,598,117 + mglB OKFHMN_23530 0.10 +0.0
4,598,118 - mglB OKFHMN_23530 0.10 -1.2
4,598,131 + mglB OKFHMN_23530 0.12 +0.8
4,598,131 + mglB OKFHMN_23530 0.12 +0.8
4,598,131 + mglB OKFHMN_23530 0.12 +0.5
4,598,132 - mglB OKFHMN_23530 0.12 +0.2
4,598,244 + mglB OKFHMN_23530 0.23 +0.7
4,598,244 + mglB OKFHMN_23530 0.23 -0.6
4,598,245 - mglB OKFHMN_23530 0.23 -0.9
4,598,353 + mglB OKFHMN_23530 0.34 +0.0
4,598,857 + mglB OKFHMN_23530 0.84 +0.6
4,598,976 + -0.4
4,599,074 - -0.4
4,599,108 - +0.9
4,599,151 + +0.3
4,599,685 + mglA OKFHMN_23535 0.40 +0.9
4,599,685 + mglA OKFHMN_23535 0.40 +0.5
4,599,877 - mglA OKFHMN_23535 0.53 +0.9
4,599,880 + mglA OKFHMN_23535 0.53 -0.3

Or see this region's nucleotide sequence