Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fruB and fruB overlap by 1 nucleotides fruB and fruA are separated by 16 nucleotides
OKFHMN_23435: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 4,574,933 to 4,576,063
fruB
OKFHMN_23440: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 4,576,063 to 4,577,001
fruB
OKFHMN_23445: fruA - PTS fructose transporter subunit IIBC, at 4,577,018 to 4,578,709
fruA
Position (kb) 4576
4577
4578 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4575.103 kb on + strand, within fruB at 4575.124 kb on + strand, within fruB at 4575.165 kb on + strand, within fruB at 4575.212 kb on + strand, within fruB at 4575.212 kb on + strand, within fruB at 4575.213 kb on - strand, within fruB at 4575.226 kb on + strand, within fruB at 4575.279 kb on + strand, within fruB at 4575.279 kb on + strand, within fruB at 4575.706 kb on + strand, within fruB at 4575.841 kb on + strand, within fruB at 4575.880 kb on + strand, within fruB at 4575.880 kb on + strand, within fruB at 4575.883 kb on + strand, within fruB at 4576.080 kb on + strand at 4576.080 kb on + strand at 4576.080 kb on + strand at 4576.102 kb on + strand at 4576.205 kb on + strand, within fruB at 4576.205 kb on + strand, within fruB at 4576.208 kb on + strand, within fruB at 4576.319 kb on + strand, within fruB at 4576.344 kb on + strand, within fruB at 4576.344 kb on + strand, within fruB at 4576.554 kb on + strand, within fruB at 4576.563 kb on + strand, within fruB at 4576.580 kb on + strand, within fruB at 4576.583 kb on + strand, within fruB at 4576.710 kb on + strand, within fruB at 4576.725 kb on + strand, within fruB at 4577.016 kb on + strand at 4577.044 kb on + strand at 4577.066 kb on + strand at 4577.066 kb on + strand at 4577.334 kb on + strand, within fruA at 4577.335 kb on - strand, within fruA at 4577.569 kb on + strand, within fruA at 4577.633 kb on + strand, within fruA at 4577.674 kb on + strand, within fruA at 4577.723 kb on + strand, within fruA at 4577.723 kb on + strand, within fruA at 4577.723 kb on + strand, within fruA at 4577.881 kb on + strand, within fruA at 4577.881 kb on + strand, within fruA at 4577.881 kb on + strand, within fruA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,575,103 + fruB OKFHMN_23435 0.15 -0.4 4,575,124 + fruB OKFHMN_23435 0.17 +1.3 4,575,165 + fruB OKFHMN_23435 0.21 +0.7 4,575,212 + fruB OKFHMN_23435 0.25 -0.3 4,575,212 + fruB OKFHMN_23435 0.25 +0.2 4,575,213 - fruB OKFHMN_23435 0.25 -0.8 4,575,226 + fruB OKFHMN_23435 0.26 -0.8 4,575,279 + fruB OKFHMN_23435 0.31 +0.4 4,575,279 + fruB OKFHMN_23435 0.31 +1.0 4,575,706 + fruB OKFHMN_23435 0.68 +0.4 4,575,841 + fruB OKFHMN_23435 0.80 +0.8 4,575,880 + fruB OKFHMN_23435 0.84 +0.2 4,575,880 + fruB OKFHMN_23435 0.84 -0.1 4,575,883 + fruB OKFHMN_23435 0.84 -0.2 4,576,080 + -5.2 4,576,080 + -5.6 4,576,080 + -3.6 4,576,102 + -4.8 4,576,205 + fruB OKFHMN_23440 0.15 -2.4 4,576,205 + fruB OKFHMN_23440 0.15 -3.8 4,576,208 + fruB OKFHMN_23440 0.15 -5.4 4,576,319 + fruB OKFHMN_23440 0.27 -0.8 4,576,344 + fruB OKFHMN_23440 0.30 -4.3 4,576,344 + fruB OKFHMN_23440 0.30 -2.1 4,576,554 + fruB OKFHMN_23440 0.52 -4.1 4,576,563 + fruB OKFHMN_23440 0.53 -4.7 4,576,580 + fruB OKFHMN_23440 0.55 -1.1 4,576,583 + fruB OKFHMN_23440 0.55 -1.5 4,576,710 + fruB OKFHMN_23440 0.69 -4.3 4,576,725 + fruB OKFHMN_23440 0.71 -1.5 4,577,016 + +0.1 4,577,044 + +0.7 4,577,066 + +0.4 4,577,066 + -0.0 4,577,334 + fruA OKFHMN_23445 0.19 -0.9 4,577,335 - fruA OKFHMN_23445 0.19 -2.3 4,577,569 + fruA OKFHMN_23445 0.33 +0.9 4,577,633 + fruA OKFHMN_23445 0.36 -0.3 4,577,674 + fruA OKFHMN_23445 0.39 -1.7 4,577,723 + fruA OKFHMN_23445 0.42 -0.2 4,577,723 + fruA OKFHMN_23445 0.42 +0.3 4,577,723 + fruA OKFHMN_23445 0.42 -0.2 4,577,881 + fruA OKFHMN_23445 0.51 +0.4 4,577,881 + fruA OKFHMN_23445 0.51 -1.4 4,577,881 + fruA OKFHMN_23445 0.51 -0.8
Or see this region's nucleotide sequence