Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23240

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmqo and eco are separated by 149 nucleotideseco and OKFHMN_23235 are separated by 133 nucleotidesOKFHMN_23235 and OKFHMN_23240 are separated by 51 nucleotidesOKFHMN_23240 and napF are separated by 15 nucleotidesnapF and napD overlap by 11 nucleotidesnapD and napA overlap by 4 nucleotides OKFHMN_23225: mqo - malate dehydrogenase (quinone), at 4,533,616 to 4,535,262 mqo OKFHMN_23230: eco - serine protease inhibitor ecotin, at 4,535,412 to 4,535,900 eco OKFHMN_23235: OKFHMN_23235 - hypothetical protein, at 4,536,034 to 4,536,198 _23235 OKFHMN_23240: OKFHMN_23240 - Orf 5, at 4,536,250 to 4,536,291 _23240 OKFHMN_23245: napF - ferredoxin-type protein NapF, at 4,536,307 to 4,536,801 napF OKFHMN_23250: napD - chaperone NapD, at 4,536,791 to 4,537,054 napD OKFHMN_23255: napA - nitrate reductase catalytic subunit NapA, at 4,537,051 to 4,539,537 napA Position (kb) 4536 4537Strain fitness (log2 ratio) -2 -1 0 1 2at 4535.260 kb on + strandat 4535.260 kb on + strandat 4535.261 kb on - strandat 4535.286 kb on - strandat 4535.286 kb on - strandat 4535.302 kb on - strandat 4535.302 kb on - strandat 4535.351 kb on - strandat 4535.473 kb on - strand, within ecoat 4535.489 kb on - strand, within ecoat 4535.489 kb on - strand, within ecoat 4535.516 kb on - strand, within ecoat 4535.542 kb on + strand, within ecoat 4535.543 kb on - strand, within ecoat 4535.610 kb on - strand, within ecoat 4535.877 kb on + strandat 4535.960 kb on - strandat 4536.179 kb on - strand, within OKFHMN_23235at 4536.214 kb on + strandat 4536.245 kb on + strandat 4536.436 kb on - strand, within napFat 4536.439 kb on - strand, within napFat 4536.524 kb on - strand, within napFat 4536.555 kb on - strand, within napFat 4536.700 kb on + strand, within napFat 4536.714 kb on + strand, within napFat 4536.715 kb on - strand, within napFat 4536.800 kb on - strandat 4536.978 kb on + strand, within napDat 4537.075 kb on - strandat 4537.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,535,260 + -0.3
4,535,260 + +0.0
4,535,261 - +0.3
4,535,286 - +0.6
4,535,286 - +1.8
4,535,302 - -0.3
4,535,302 - +0.3
4,535,351 - +0.8
4,535,473 - eco OKFHMN_23230 0.12 -0.4
4,535,489 - eco OKFHMN_23230 0.16 -0.7
4,535,489 - eco OKFHMN_23230 0.16 -0.0
4,535,516 - eco OKFHMN_23230 0.21 +0.1
4,535,542 + eco OKFHMN_23230 0.27 -0.1
4,535,543 - eco OKFHMN_23230 0.27 -0.6
4,535,610 - eco OKFHMN_23230 0.40 -0.2
4,535,877 + -2.3
4,535,960 - -1.0
4,536,179 - OKFHMN_23235 0.88 +0.1
4,536,214 + +0.6
4,536,245 + +0.3
4,536,436 - napF OKFHMN_23245 0.26 +0.6
4,536,439 - napF OKFHMN_23245 0.27 +0.9
4,536,524 - napF OKFHMN_23245 0.44 -2.1
4,536,555 - napF OKFHMN_23245 0.50 +0.1
4,536,700 + napF OKFHMN_23245 0.79 -0.1
4,536,714 + napF OKFHMN_23245 0.82 +0.1
4,536,715 - napF OKFHMN_23245 0.82 +0.1
4,536,800 - +0.6
4,536,978 + napD OKFHMN_23250 0.71 +0.4
4,537,075 - -0.3
4,537,168 - +0.1

Or see this region's nucleotide sequence