Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gyrA and yfaA are separated by 282 nucleotides yfaA and yfaT overlap by 4 nucleotides yfaT and yfaS are separated by 143 nucleotides
OKFHMN_23130: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 4,508,167 to 4,510,794
gyrA
OKFHMN_23135: yfaA - DUF2138 domain-containing protein, at 4,511,077 to 4,512,630
yfaA
OKFHMN_23140: yfaT - Uncharacterized protein YfaT, at 4,512,627 to 4,513,250
yfaT
OKFHMN_23145: yfaS - Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family, at 4,513,394 to 4,517,194
yfaS
Position (kb) 4511
4512
4513 Strain fitness (log2 ratio) -2
-1
0
1 at 4510.926 kb on - strand at 4511.038 kb on + strand at 4511.480 kb on + strand, within yfaA at 4511.549 kb on - strand, within yfaA at 4511.592 kb on + strand, within yfaA at 4511.784 kb on - strand, within yfaA at 4511.850 kb on + strand, within yfaA at 4511.887 kb on - strand, within yfaA at 4511.887 kb on - strand, within yfaA at 4512.105 kb on + strand, within yfaA at 4512.386 kb on + strand, within yfaA at 4512.387 kb on - strand, within yfaA at 4512.389 kb on + strand, within yfaA at 4512.415 kb on + strand, within yfaA at 4512.418 kb on - strand, within yfaA at 4512.556 kb on + strand at 4512.557 kb on - strand at 4512.611 kb on + strand at 4512.842 kb on + strand, within yfaT at 4512.877 kb on - strand, within yfaT at 4512.987 kb on + strand, within yfaT at 4513.001 kb on + strand, within yfaT at 4513.093 kb on - strand, within yfaT at 4513.101 kb on + strand, within yfaT at 4513.164 kb on - strand, within yfaT at 4513.225 kb on - strand at 4513.291 kb on + strand at 4513.373 kb on - strand at 4513.565 kb on - strand at 4513.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,510,926 - -0.7 4,511,038 + -0.2 4,511,480 + yfaA OKFHMN_23135 0.26 +0.6 4,511,549 - yfaA OKFHMN_23135 0.30 -1.5 4,511,592 + yfaA OKFHMN_23135 0.33 -0.6 4,511,784 - yfaA OKFHMN_23135 0.45 +0.1 4,511,850 + yfaA OKFHMN_23135 0.50 +0.2 4,511,887 - yfaA OKFHMN_23135 0.52 -0.9 4,511,887 - yfaA OKFHMN_23135 0.52 +0.3 4,512,105 + yfaA OKFHMN_23135 0.66 +0.5 4,512,386 + yfaA OKFHMN_23135 0.84 +1.1 4,512,387 - yfaA OKFHMN_23135 0.84 -0.5 4,512,389 + yfaA OKFHMN_23135 0.84 +1.7 4,512,415 + yfaA OKFHMN_23135 0.86 +0.2 4,512,418 - yfaA OKFHMN_23135 0.86 -0.9 4,512,556 + +0.2 4,512,557 - -1.1 4,512,611 + +0.1 4,512,842 + yfaT OKFHMN_23140 0.34 +0.5 4,512,877 - yfaT OKFHMN_23140 0.40 +0.5 4,512,987 + yfaT OKFHMN_23140 0.58 +0.2 4,513,001 + yfaT OKFHMN_23140 0.60 +0.2 4,513,093 - yfaT OKFHMN_23140 0.75 -0.5 4,513,101 + yfaT OKFHMN_23140 0.76 -1.1 4,513,164 - yfaT OKFHMN_23140 0.86 -2.0 4,513,225 - -1.5 4,513,291 + +1.1 4,513,373 - +0.6 4,513,565 - -0.9 4,513,621 + -0.3
Or see this region's nucleotide sequence